⚙ D4083 Make the indexer storage write to the journal.

vlorentz created this revision.Sep 29 2020, 4:21 PM

Herald added a reviewer: Reviewers. · View Herald TranscriptSep 29 2020, 4:21 PM

vlorentz planned changes to this revision.Sep 29 2020, 4:21 PM

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commit 842798f886f54f64a7dc6a0bb092a6fcc0f04b63
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    [WIP] start writing to the journal from the idx-storage

Link to build: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/51/
See console output for more information: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/51/console

Harbormaster failed remote builds in B15696: Diff 14402!Sep 29 2020, 4:23 PM

rebase

vlorentz planned changes to this revision.Oct 19 2020, 2:34 PM

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commit 27ca432c1a67d63d2a99c160d16ea1602ae8b8d0
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    [WIP] start writing to the journal from the idx-storage

Link to build: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/96/
See console output for more information: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/96/console

Harbormaster failed remote builds in B16447: Diff 15212!Oct 19 2020, 2:36 PM

rebase on top of D4392.

vlorentz planned changes to this revision.Nov 3 2020, 11:09 AM

vlorentz added a parent revision: D4392: Remove metadata deletion endpoints and algorithms.Nov 3 2020, 11:09 AM

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Updating 300b307..c644012
Fast-forward
 swh/indexer/metadata.py                      | 41 +-----------
 swh/indexer/storage/__init__.py              | 24 +------
 swh/indexer/storage/db.py                    | 22 -------
 swh/indexer/storage/in_memory.py             | 54 ++++++----------
 swh/indexer/storage/interface.py             | 32 ----------
 swh/indexer/storage/writer.py                | 57 +++++++++++++++++
 swh/indexer/tests/storage/conftest.py        |  6 +-
 swh/indexer/tests/storage/test_api_client.py |  6 +-
 swh/indexer/tests/storage/test_in_memory.py  |  2 +-
 swh/indexer/tests/storage/test_storage.py    | 95 +---------------------------
 swh/indexer/tests/test_origin_metadata.py    | 26 --------
 11 files changed, 94 insertions(+), 271 deletions(-)
 create mode 100644 swh/indexer/storage/writer.py

Changes applied before test

commit c644012f1a653f6d3b1d4a2f53e66eca54bacc6c
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    [WIP] start writing to the journal from the idx-storage

commit 94c825919320bf3d3e2608b823dc887ed6122413
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Mon Nov 2 13:47:51 2020 +0100

    Remove metadata deletion endpoints and algorithms
    
    This was expected to be used in these two cases:
    
    1. if we remove mappings or file detection from a metadata indexer
    2. if an origin removes all its metadata files
    
    but:
    
    1. if we do so, then we should bump the indexer version, so the
       old metadata will be preserved anyway, as different indexer
       versions get different indexer_configuration_ids
    2. this should be a rather rare even, and even if it happens, we
       might want to keep the old metadata anyway rather than
       nothing (even if it's outdated), for search purposes.
    
    Additionally, this commit is motivated by:
    
    * that's less issues to deal with when writing to Kafka (the journal
      writer currently doesn't support suppression; and we would also have
      to add support for deletion in all consumers)
    * less code (~250 lines)

Link to build: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/101/
See console output for more information: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/101/console

Harbormaster failed remote builds in B16795: Diff 15566!Nov 3 2020, 11:11 AM

no longer a WIP

vlorentz retitled this revision from [WIP] start writing to the journal from the idx-storage to Make the indexer storage write to the journal..Nov 5 2020, 3:03 PM

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Could not rebase; Attempt merge onto e2835bfff6...

Updating e2835bf..e59868e
Fast-forward
 swh/indexer/storage/__init__.py              | 26 ++++++++++++-
 swh/indexer/storage/db.py                    | 12 ++++++
 swh/indexer/storage/in_memory.py             | 39 +++++++++++++------
 swh/indexer/storage/model.py                 | 13 +++++++
 swh/indexer/storage/writer.py                | 57 ++++++++++++++++++++++++++++
 swh/indexer/tests/storage/conftest.py        |  6 ++-
 swh/indexer/tests/storage/test_api_client.py | 29 +++++++++++---
 swh/indexer/tests/storage/test_in_memory.py  |  2 +-
 swh/indexer/tests/storage/test_storage.py    | 41 ++++++++++++++------
 9 files changed, 193 insertions(+), 32 deletions(-)
 create mode 100644 swh/indexer/storage/writer.py

Changes applied before test

commit e59868eb41f72fe3568de477fe4a0711269b375d
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    Make the indexer storage write to the journal.

commit 8272bc90a367f2d9a9eb231505ad3ccc126c714f
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:36:44 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: use more values, to make the test less likely to unexpectedly pass.

commit 5a5af91ac5aee172ff58e68f8b2121de179635e9
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:37:43 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: Fix failure on nondeterministic order
    
    postgresql kindly returns the results in the order the test expected... most of the time.

Link to build: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/114/
See console output for more information: https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/114/console

Harbormaster failed remote builds in B16881: Diff 15659!Nov 5 2020, 3:05 PM

Build is green

Patch application report for D4083 (id=15659)

Could not rebase; Attempt merge onto e2835bfff6...

Updating e2835bf..e59868e
Fast-forward
 swh/indexer/storage/__init__.py              | 26 ++++++++++++-
 swh/indexer/storage/db.py                    | 12 ++++++
 swh/indexer/storage/in_memory.py             | 39 +++++++++++++------
 swh/indexer/storage/model.py                 | 13 +++++++
 swh/indexer/storage/writer.py                | 57 ++++++++++++++++++++++++++++
 swh/indexer/tests/storage/conftest.py        |  6 ++-
 swh/indexer/tests/storage/test_api_client.py | 29 +++++++++++---
 swh/indexer/tests/storage/test_in_memory.py  |  2 +-
 swh/indexer/tests/storage/test_storage.py    | 41 ++++++++++++++------
 9 files changed, 193 insertions(+), 32 deletions(-)
 create mode 100644 swh/indexer/storage/writer.py

Changes applied before test

commit e59868eb41f72fe3568de477fe4a0711269b375d
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    Make the indexer storage write to the journal.

commit 8272bc90a367f2d9a9eb231505ad3ccc126c714f
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:36:44 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: use more values, to make the test less likely to unexpectedly pass.

commit 5a5af91ac5aee172ff58e68f8b2121de179635e9
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:37:43 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: Fix failure on nondeterministic order
    
    postgresql kindly returns the results in the order the test expected... most of the time.

See https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/115/ for more details.

Harbormaster completed remote builds in B16881: Diff 15659.Nov 5 2020, 3:24 PM

remove print

Build is green

Patch application report for D4083 (id=15661)

Could not rebase; Attempt merge onto e2835bfff6...

Updating e2835bf..1fd7ae9
Fast-forward
 swh/indexer/storage/__init__.py              | 26 ++++++++++++-
 swh/indexer/storage/db.py                    | 12 ++++++
 swh/indexer/storage/in_memory.py             | 39 +++++++++++++------
 swh/indexer/storage/model.py                 | 13 +++++++
 swh/indexer/storage/writer.py                | 56 ++++++++++++++++++++++++++++
 swh/indexer/tests/storage/conftest.py        |  6 ++-
 swh/indexer/tests/storage/test_api_client.py | 29 +++++++++++---
 swh/indexer/tests/storage/test_in_memory.py  |  2 +-
 swh/indexer/tests/storage/test_storage.py    | 41 ++++++++++++++------
 9 files changed, 192 insertions(+), 32 deletions(-)
 create mode 100644 swh/indexer/storage/writer.py

Changes applied before test

commit 1fd7ae9261e8c6dce5a9cfbfa6c2bc758b833b22
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    Make the indexer storage write to the journal.

commit 8272bc90a367f2d9a9eb231505ad3ccc126c714f
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:36:44 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: use more values, to make the test less likely to unexpectedly pass.

commit 5a5af91ac5aee172ff58e68f8b2121de179635e9
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Thu Nov 5 13:37:43 2020 +0100

    test_origin_intrinsic_metadata_add__deadlock: Fix failure on nondeterministic order
    
    postgresql kindly returns the results in the order the test expected... most of the time.

See https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/116/ for more details.

Harbormaster completed remote builds in B16883: Diff 15661.Nov 5 2020, 3:33 PM

vlorentz added a task: T2651: Make the indexer-storage publish its rows to Kafka.Nov 6 2020, 12:42 PM

vlorentz mentioned this in D1959: Publish origin_intrinsic_metadata to Kafka..

overall I'm ok, but I find it really lacks some documentation/explanations of how this works, especially the JournalWriter collaborator object

swh/indexer/storage/__init__.py
128	I know this docstring was outdated before this diff, but maybe it could be updated as part of it.

This revision is now accepted and ready to land.Nov 10 2020, 3:12 PM

update docstring + add type to tool_getter.

Build is green

Patch application report for D4083 (id=15797)

Rebasing onto 8272bc90a3...

Current branch diff-target is up to date.

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commit 340c73a19604273467804c7c54b217b780a1677a
Author: Valentin Lorentz <vlorentz@softwareheritage.org>
Date:   Tue Sep 29 16:21:13 2020 +0200

    Make the indexer storage write to the journal.

See https://jenkins.softwareheritage.org/job/DCIDX/job/tests-on-diff/117/ for more details.

Harbormaster completed remote builds in B17008: Diff 15797.Nov 10 2020, 3:56 PM

Closed by commit rDCIDX340c73a19604: Make the indexer storage write to the journal. (authored by vlorentz). · Explain WhyNov 12 2020, 12:58 PM

This revision was automatically updated to reflect the committed changes.

vlorentz added a commit: rDCIDX340c73a19604: Make the indexer storage write to the journal..

olasd added a subscriber: olasd.Nov 26 2020, 5:49 PM

olasd added inline comments.

swh/indexer/storage/writer.py
64	This will flush the journal writer on every message. Please avoid doing that.

Make the indexer storage write to the journal.
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Diff 15659

swh/indexer/storage/init.py

swh/indexer/storage/db.py

swh/indexer/storage/in_memory.py

swh/indexer/storage/model.py

swh/indexer/storage/writer.py

swh/indexer/tests/storage/conftest.py

swh/indexer/tests/storage/test_api_client.py

swh/indexer/tests/storage/test_in_memory.py

swh/indexer/tests/storage/test_storage.py

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Diff 15659

swh/indexer/storage/__init__.py

swh/indexer/storage/db.py

swh/indexer/storage/in_memory.py

swh/indexer/storage/model.py

swh/indexer/storage/writer.py

swh/indexer/tests/storage/conftest.py

swh/indexer/tests/storage/test_api_client.py

swh/indexer/tests/storage/test_in_memory.py

swh/indexer/tests/storage/test_storage.py

Make the indexer storage write to the journal.
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swh/indexer/storage/init.py