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db.py
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db.py
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# Copyright (C) 2015 The Software Heritage developers
# See the AUTHORS file at the top-level directory of this distribution
# License: GNU General Public License version 3, or any later version
# See top-level LICENSE file for more information
import
binascii
import
datetime
import
functools
import
json
import
psycopg2
import
tempfile
from
contextlib
import
contextmanager
TMP_CONTENT_TABLE
=
'tmp_content'
def
stored_procedure
(
stored_proc
):
"""decorator to execute remote stored procedure, specified as argument
Generally, the body of the decorated function should be empty. If it is
not, the stored procedure will be executed first; the function body then.
"""
def
wrap
(
meth
):
@functools.wraps
(
meth
)
def
_meth
(
self
,
*
args
,
**
kwargs
):
cur
=
kwargs
.
get
(
'cur'
,
None
)
self
.
_cursor
(
cur
)
.
execute
(
'SELECT
%s
()'
%
stored_proc
)
meth
(
self
,
*
args
,
**
kwargs
)
return
_meth
return
wrap
def
jsonize
(
value
):
"""Convert a value to a psycopg2 JSON object if necessary"""
if
isinstance
(
value
,
dict
):
return
psycopg2
.
extras
.
Json
(
value
)
return
value
def
entry_to_bytes
(
entry
):
"""Convert an entry coming from the database to bytes"""
if
isinstance
(
entry
,
memoryview
):
return
entry
.
tobytes
()
if
isinstance
(
entry
,
list
):
return
[
entry_to_bytes
(
value
)
for
value
in
entry
]
return
entry
def
line_to_bytes
(
line
):
"""Convert a line coming from the database to bytes"""
return
line
.
__class__
(
entry_to_bytes
(
entry
)
for
entry
in
line
)
def
cursor_to_bytes
(
cursor
):
"""Yield all the data from a cursor as bytes"""
yield from
(
line_to_bytes
(
line
)
for
line
in
cursor
)
class
Db
:
"""Proxy to the SWH DB, with wrappers around stored procedures
"""
@classmethod
def
connect
(
cls
,
*
args
,
**
kwargs
):
"""factory method to create a DB proxy
Accepts all arguments of psycopg2.connect; only some specific
possibilities are reported below.
Args:
connstring: libpq2 connection string
"""
conn
=
psycopg2
.
connect
(
*
args
,
**
kwargs
)
return
cls
(
conn
)
def
_cursor
(
self
,
cur_arg
):
"""get a cursor: from cur_arg if given, or a fresh one otherwise
meant to avoid boilerplate if/then/else in methods that proxy stored
procedures
"""
if
cur_arg
is
not
None
:
return
cur_arg
# elif self.cur is not None:
# return self.cur
else
:
return
self
.
conn
.
cursor
()
def
__init__
(
self
,
conn
):
"""create a DB proxy
Args:
conn: psycopg2 connection to the SWH DB
"""
self
.
conn
=
conn
@contextmanager
def
transaction
(
self
):
"""context manager to execute within a DB transaction
Yields:
a psycopg2 cursor
"""
with
self
.
conn
.
cursor
()
as
cur
:
try
:
yield
cur
self
.
conn
.
commit
()
except
:
if
not
self
.
conn
.
closed
:
self
.
conn
.
rollback
()
raise
def
mktemp
(
self
,
tblname
,
cur
=
None
):
self
.
_cursor
(
cur
)
.
execute
(
'SELECT swh_mktemp(
%s
)'
,
(
tblname
,))
def
mktemp_dir_entry
(
self
,
entry_type
,
cur
=
None
):
self
.
_cursor
(
cur
)
.
execute
(
'SELECT swh_mktemp_dir_entry(
%s
)'
,
((
'directory_entry_
%s
'
%
entry_type
),))
@stored_procedure
(
'swh_mktemp_revision'
)
def
mktemp_revision
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_mktemp_release'
)
def
mktemp_release
(
self
,
cur
=
None
):
pass
def
copy_to
(
self
,
items
,
tblname
,
columns
,
cur
=
None
,
item_cb
=
None
):
def
escape
(
data
):
if
data
is
None
:
return
''
if
isinstance
(
data
,
bytes
):
return
'
\\
x
%s
'
%
binascii
.
hexlify
(
data
)
.
decode
(
'ascii'
)
elif
isinstance
(
data
,
str
):
return
'"
%s
"'
%
data
.
replace
(
'"'
,
'""'
)
elif
isinstance
(
data
,
datetime
.
datetime
):
# We escape twice to make sure the string generated by
# isoformat gets escaped
return
escape
(
data
.
isoformat
())
elif
isinstance
(
data
,
dict
):
return
escape
(
json
.
dumps
(
data
))
elif
isinstance
(
data
,
psycopg2
.
extras
.
Range
):
# We escape twice here too, so that we make sure
# everything gets passed to copy properly
return
escape
(
'
%s%s
,
%s%s
'
%
(
'['
if
data
.
lower_inc
else
'('
,
'-infinity'
if
data
.
lower_inf
else
escape
(
data
.
lower
),
'infinity'
if
data
.
upper_inf
else
escape
(
data
.
upper
),
']'
if
data
.
upper_inc
else
')'
,
)
)
else
:
# We don't escape here to make sure we pass literals properly
return
str
(
data
)
with
tempfile
.
TemporaryFile
(
'w+'
)
as
f
:
for
d
in
items
:
if
item_cb
is
not
None
:
item_cb
(
d
)
line
=
[
escape
(
d
.
get
(
k
))
for
k
in
columns
]
f
.
write
(
','
.
join
(
line
))
f
.
write
(
'
\n
'
)
f
.
seek
(
0
)
self
.
_cursor
(
cur
)
.
copy_expert
(
'COPY
%s
(
%s
) FROM STDIN CSV'
%
(
tblname
,
', '
.
join
(
columns
)),
f
)
@stored_procedure
(
'swh_content_add'
)
def
content_add_from_temp
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_directory_add'
)
def
directory_add_from_temp
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_skipped_content_add'
)
def
skipped_content_add_from_temp
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_revision_add'
)
def
revision_add_from_temp
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_release_add'
)
def
release_add_from_temp
(
self
,
cur
=
None
):
pass
@stored_procedure
(
'swh_occurrence_history_add'
)
def
occurrence_history_add_from_temp
(
self
,
cur
=
None
):
pass
def
content_missing_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
"""SELECT sha1, sha1_git, sha256
FROM swh_content_missing()"""
)
yield from
cursor_to_bytes
(
cur
)
def
skipped_content_missing_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
"""SELECT sha1, sha1_git, sha256
FROM swh_skipped_content_missing()"""
)
yield from
cursor_to_bytes
(
cur
)
def
content_find
(
self
,
sha1
=
None
,
sha1_git
=
None
,
sha256
=
None
,
cur
=
None
):
"""Find the content optionally on a combination of the following
checksums sha1, sha1_git or sha256.
Args:
sha1: sha1 content
git_sha1: the sha1 computed `a la git` sha1 of the content
sha256: sha256 content
Returns:
The triplet (sha1, sha1_git, sha256) if found or None.
"""
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
"""SELECT sha1, sha1_git, sha256
FROM swh_content_find(%s, %s, %s)
LIMIT 1"""
,
(
sha1
,
sha1_git
,
sha256
))
content
=
line_to_bytes
(
cur
.
fetchone
())
return
None
if
content
==
(
None
,
None
,
None
)
else
content
def
content_find_occurrence
(
self
,
sha1
,
cur
=
None
):
"""Find one content's occurrence.
Args:
sha1: sha1 content
cur: cursor to use
Returns:
One occurrence for that particular sha1
"""
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
"""SELECT *
FROM swh_content_find_occurrence(%s)
LIMIT 1"""
,
(
sha1
,
))
return
line_to_bytes
(
cur
.
fetchone
())
def
directory_missing_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT * FROM swh_directory_missing()'
)
yield from
cursor_to_bytes
(
cur
)
def
directory_walk_one
(
self
,
directory
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT * FROM swh_directory_walk_one(
%s
)'
,
(
directory
,))
yield from
cursor_to_bytes
(
cur
)
def
revision_missing_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT id FROM swh_revision_missing() as r(id)'
)
yield from
cursor_to_bytes
(
cur
)
def
revision_get_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT * FROM swh_revision_get()'
)
yield from
cursor_to_bytes
(
cur
)
def
release_missing_from_temp
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT id FROM swh_release_missing() as r(id)'
)
yield from
cursor_to_bytes
(
cur
)
def
stat_counters
(
self
,
cur
=
None
):
cur
=
self
.
_cursor
(
cur
)
cur
.
execute
(
'SELECT * FROM swh_stat_counters()'
)
yield from
cur
fetch_history_cols
=
[
'origin'
,
'date'
,
'status'
,
'result'
,
'stdout'
,
'stderr'
,
'duration'
]
def
create_fetch_history
(
self
,
fetch_history
,
cur
=
None
):
"""Create a fetch_history entry with the data in fetch_history"""
cur
=
self
.
_cursor
(
cur
)
query
=
'''INSERT INTO fetch_history (%s)
VALUES (%s) RETURNING id'''
%
(
','
.
join
(
self
.
fetch_history_cols
),
','
.
join
([
'
%s
'
]
*
len
(
self
.
fetch_history_cols
))
)
cur
.
execute
(
query
,
[
fetch_history
.
get
(
col
)
for
col
in
self
.
fetch_history_cols
])
return
cur
.
fetchone
()[
0
]
def
get_fetch_history
(
self
,
fetch_history_id
,
cur
=
None
):
"""Get a fetch_history entry with the given id"""
cur
=
self
.
_cursor
(
cur
)
query
=
'''SELECT %s FROM fetch_history WHERE id=%%s'''
%
(
', '
.
join
(
self
.
fetch_history_cols
),
)
cur
.
execute
(
query
,
(
fetch_history_id
,))
data
=
cur
.
fetchone
()
if
not
data
:
return
None
ret
=
{
'id'
:
fetch_history_id
}
for
i
,
col
in
enumerate
(
self
.
fetch_history_cols
):
ret
[
col
]
=
data
[
i
]
return
ret
def
update_fetch_history
(
self
,
fetch_history
,
cur
=
None
):
"""Update the fetch_history entry from the data in fetch_history"""
cur
=
self
.
_cursor
(
cur
)
query
=
'''UPDATE fetch_history
SET %s
WHERE id=%%s'''
%
(
','
.
join
(
'
%s
=
%%
s'
%
col
for
col
in
self
.
fetch_history_cols
)
)
cur
.
execute
(
query
,
[
jsonize
(
fetch_history
.
get
(
col
))
for
col
in
self
.
fetch_history_cols
+
[
'id'
]])
File Metadata
Details
Attached
Mime Type
text/x-python
Expires
Jul 4 2025, 6:53 PM (5 w, 6 d ago)
Storage Engine
blob
Storage Format
Raw Data
Storage Handle
3264691
Attached To
rDSTO Storage manager
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