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#+COLUMNS: %40ITEM %10BEAMER_env(Env) %9BEAMER_envargs(Env Args) %10BEAMER_act(Act) %4BEAMER_col(Col) %10BEAMER_extra(Extra) %8BEAMER_opt(Opt)
#+INCLUDE: "prelude.org" :minlevel 1
* Reproducibilité
:PROPERTIES:
:CUSTOM_ID: main
:END:
** Reproducibilité dans un monde numérique
:PROPERTIES:
:CUSTOM_ID: reprod
:END:
Quand il y a du logiciel dans une expérience, il nous faut
- accès ouvert :: aux articles qui le décrivent
- les données ouvertes :: utilisés dans l'expérience
- le code source :: de tous les composants
- l'environnement :: d'éxécution
- des références stables :: entre tout cela
#+beamer: \pause
*** Remarque
Les deux prémiers points sont biens connus\\
\mbox{}\\
\flushright ... mais pour le /logiciel/?
** Software is Knowledge
:PROPERTIES:
:CUSTOM_ID: softwareknowledge
:END:
*** Software is /an essential component/ of modern scientific research :B_picblock:
# Deep knowledge embodied in complex software systems
:PROPERTIES:
:BEAMER_opt: pic=papermountain,width=.25\linewidth
:BEAMER_env: picblock
:BEAMER_act: +-
:END:
Top 100 papers (Nature, October 2014)\\
#+BEGIN_QUOTE
[...] the vast majority describe experimental methods or software that have become essential in their fields.\\
#+END_QUOTE
http://www.nature.com/news/the-top-100-papers-1.16224
# Why using the Source?
** Use the Source, Luke!
:PROPERTIES:
:CUSTOM_ID: opensourcereprod
:END:
Some people claim that having (all) the source of the code used in
an experiment is /not worth the effort/
(see ``Replicability is not Reproducibility: Nor is it Good
Science'', Chris Drummond, ICML 2009)
#+BEAMER: \pause
*** Sure, diversity \emph{is} important, but:
- Source code is like the proof used in a theorem: can we really
accept /Fermat statements/ like ``the details are omitted
due to lack of space''?
- modern complex systems makes even the simplest experiment
depend on a wealth of components and configuration options
- access to /all/ the source code is not just necessary
to /reproduce/, it is also useful to /evolve and modify/,
to /build new experiments/ from the old ones
# Why using the Source?
#+INCLUDE: "../../common/modules/sourcecode-reproductibility.org::#opensourcereprod" :minlevel 2

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