Motivation:
1. It makes it easier to visualize what is actually happening when modifying
the graph, by working explicitly on triples instead of a JSON-LD (a tree
serialization of the graph).
2. Remove the need for the hacky `merge_values()` function (and possibly
`merge_documents()` in a future commit)
3. It also catches malformed data exactly where it is added in the document
(the call to rdflib.Graph.add()) instead of at the end of the mapping
when running compaction/expansion.
Downsides:
1. Tests are clunkier, because they relied on deterministic order of
unordered lists; but rdflib does not guarantee it
2. Code is longer
3. Extra dependency (which we will need at some point if we want to
import from RDF datasets, anyway)
Sorry for the big diff. Bulk of changes is in `base.py`, `codemeta.py`, and `utils.py, everything else is adaptations of existing code without changing the underlying semantics
Depends on D8275, D8278, and D8281