diff --git a/swh/storage/storage.py b/swh/storage/storage.py index caa3b1ce..dad1b4f1 100644 --- a/swh/storage/storage.py +++ b/swh/storage/storage.py @@ -1,371 +1,402 @@ # Copyright (C) 2015 The Software Heritage developers # See the AUTHORS file at the top-level directory of this distribution # License: GNU General Public License version 3, or any later version # See top-level LICENSE file for more information import functools import itertools import psycopg2 from collections import defaultdict from .db import Db from .objstorage import ObjStorage def db_transaction(meth): """decorator to execute Storage methods within DB transactions The decorated method must accept a `cur` keyword argument """ @functools.wraps(meth) def _meth(self, *args, **kwargs): with self.db.transaction() as cur: return meth(self, *args, cur=cur, **kwargs) return _meth def db_transaction_generator(meth): """decorator to execute Storage methods within DB transactions, while returning a generator The decorated method must accept a `cur` keyword argument """ @functools.wraps(meth) def _meth(self, *args, **kwargs): with self.db.transaction() as cur: yield from meth(self, *args, cur=cur, **kwargs) return _meth class Storage(): """SWH storage proxy, encompassing DB and object storage """ def __init__(self, db_conn, obj_root): """ Args: db_conn: either a libpq connection string, or a psycopg2 connection obj_root: path to the root of the object storage """ if isinstance(db_conn, psycopg2.extensions.connection): self.db = Db(db_conn) else: self.db = Db.connect(db_conn) self.objstorage = ObjStorage(obj_root) @db_transaction def content_add(self, content, cur): """Add content blobs to the storage Note: in case of DB errors, objects might have already been added to the object storage and will not be removed. Since addition to the object storage is idempotent, that should not be a problem. Args: content: iterable of dictionaries representing individual pieces of content to add. Each dictionary has the following keys: - data (bytes): the actual content - length (int): content length - one key for each checksum algorithm in swh.core.hashutil.ALGORITHMS, mapped to the corresponding checksum """ db = self.db # create temporary table for metadata injection db.mktemp('content', cur) def add_to_objstorage(cont): self.objstorage.add_bytes(cont['data'], obj_id=cont['sha1']) db.copy_to(content, 'tmp_content', ['sha1', 'sha1_git', 'sha256', 'length'], cur, item_cb=add_to_objstorage) # move metadata in place db.content_add_from_temp(cur) db.conn.commit() @db_transaction_generator def content_missing(self, content, cur): """List content missing from storage Args: content: iterable of dictionaries containing one key for each checksum algorithm in swh.core.hashutil.ALGORITHMS, mapped to the corresponding checksum, and a length key mapped to the content length. Returns: an iterable of sha1s missing from the storage Raises: TODO: an exception when we get a hash collision. """ db = self.db # Create temporary table for metadata injection db.mktemp('content', cur) db.copy_to(content, 'tmp_content', ['sha1', 'sha1_git', 'sha256', 'length'], cur) for obj in db.content_missing_from_temp(cur): yield obj[0] def directory_add(self, directories): """Add directories to the storage Args: directories: iterable of dictionaries representing the individual directories to add. Each dict has the following keys: - id (sha1_git): the id of the directory to add - entries (list): list of dicts for each entry in the directory. Each dict has the following keys: - name (bytes) - type (one of 'file', 'dir', 'rev'): type of the directory entry (file, directory, revision) - target (sha1_git): id of the object pointed at by the directory entry - perms (int): entry permissions - atime (datetime.DateTime): entry access time - ctime (datetime.DateTime): entry creation time - mtime (datetime.DateTime): entry modification time """ dirs = set() dir_entries = { 'file': defaultdict(list), 'dir': defaultdict(list), 'rev': defaultdict(list), } for cur_dir in directories: dir_id = cur_dir['id'] dirs.add(dir_id) for entry in cur_dir['entries']: entry['dir_id'] = dir_id dir_entries[entry['type']][dir_id].append(entry) dirs_missing = set(self.directory_missing(dirs)) if not dirs_missing: return db = self.db with db.transaction() as cur: dirs_missing_dict = ({'id': dir} for dir in dirs_missing) db.copy_to(dirs_missing_dict, 'directory', ['id'], cur) for entry_type, entry_list in dir_entries.items(): entries = itertools.chain.from_iterable( entries_for_dir for dir_id, entries_for_dir in entry_list.items() if dir_id in dirs_missing) db.mktemp_dir_entry(entry_type) db.copy_to( entries, 'tmp_directory_entry_%s' % entry_type, ['target', 'name', 'perms', 'atime', 'mtime', 'ctime', 'dir_id'], cur, ) cur.execute('SELECT swh_directory_entry_%s_add()' % entry_type) @db_transaction_generator def directory_missing(self, directories, cur): """List directories missing from storage Args: an iterable of directory ids Returns: a list of missing directory ids """ db = self.db # Create temporary table for metadata injection db.mktemp('directory', cur) directories_dicts = ({'id': dir} for dir in directories) db.copy_to(directories_dicts, 'tmp_directory', ['id'], cur) for obj in db.directory_missing_from_temp(cur): yield obj[0] def directory_get(self, directory): """Get the entries for one directory""" yield from self.db.directory_walk_one(directory) def revision_add(self, revisions): """Add revisions to the storage Args: revisions: iterable of dictionaries representing the individual revisions to add. Each dict has the following keys: - id (sha1_git): id of the revision to add - date (datetime.DateTime): date the revision was written - date_offset (int): offset from UTC in minutes the revision was written - committer_date (datetime.DateTime): date the revision got added to the origin - committer_date_offset (int): offset from UTC in minutes the revision was added to the origin - type (one of 'git', 'tar'): type of the revision added - directory (sha1_git): the directory the revision points at - message (bytes): the message associated with the revision - author_name (bytes): the name of the revision author - author_email (bytes): the email of the revision author - committer_name (bytes): the name of the revision committer - committer_email (bytes): the email of the revision committer - parents (list of sha1_git): the parents of this revision """ db = self.db parents = {} for revision in revisions: id = revision['id'] cur_parents = enumerate(revision.get('parents', [])) parents[id] = [{ 'id': id, 'parent_id': parent, 'parent_rank': i } for i, parent in cur_parents] revisions_missing = list(self.revision_missing(parents.keys())) if not revisions_missing: return with db.transaction() as cur: db.mktemp_revision(cur) revisions_filtered = (revision for revision in revisions if revision['id'] in revisions_missing) db.copy_to(revisions_filtered, 'tmp_revision', ['id', 'date', 'date_offset', 'committer_date', 'committer_date_offset', 'type', 'directory', 'message', 'author_name', 'author_email', 'committer_name', 'committer_email'], cur) db.revision_add_from_temp(cur) parents_filtered = itertools.chain.from_iterable( parents[id] for id in revisions_missing) db.copy_to(parents_filtered, 'revision_history', ['id', 'parent_id', 'parent_rank'], cur) @db_transaction_generator def revision_missing(self, revisions, cur): """List revisions missing from storage Args: an iterable of revision ids Returns: a list of missing revision ids """ db = self.db # Create temporary table for metadata injection db.mktemp('revision', cur) revisions_dicts = ({'id': dir, 'type': 'git'} for dir in revisions) db.copy_to(revisions_dicts, 'tmp_revision', ['id', 'type'], cur) for obj in db.revision_missing_from_temp(cur): yield obj[0] def release_add(self, releases): """Add releases to the storage Args: releases: iterable of dictionaries representing the individual releases to add. Each dict has the following keys: - id (sha1_git): id of the release to add - revision (sha1_git): id of the revision the release points to - date (datetime.DateTime): the date the release was made - date_offset (int): offset from UTC in minutes the release was made - name (bytes): the name of the release - comment (bytes): the comment associated with the release - author_name (bytes): the name of the release author - author_email (bytes): the email of the release author """ db = self.db release_ids = set(release['id'] for release in releases) releases_missing = list(self.release_missing(release_ids)) if not releases_missing: return with db.transaction() as cur: db.mktemp_release(cur) releases_filtered = (release for release in releases if release['id'] in releases_missing) db.copy_to(releases_filtered, 'tmp_release', ['id', 'revision', 'date', 'date_offset', 'name', 'comment', 'author_name', 'author_email'], cur) db.release_add_from_temp(cur) @db_transaction_generator def release_missing(self, releases, cur=None): """List releases missing from storage Args: an iterable of release ids Returns: a list of missing release ids """ db = self.db # Create temporary table for metadata injection db.mktemp('release', cur) releases_dicts = ({'id': rel} for rel in releases) db.copy_to(releases_dicts, 'tmp_release', ['id'], cur) for obj in db.release_missing_from_temp(cur): yield obj[0] def occurrence_add(self, occurrences): """Add occurrences to the storage Args: occurrences: iterable of dictionaries representing the individual occurrences to add. Each dict has the following keys: - origin (int): id of the origin corresponding to the occurrence - reference (bytes): the reference name of the occurrence - revision (sha1_git): the id of the revision pointed to by the occurrence - date (datetime.DateTime): the validity date for the given occurrence """ pass - def origin_add(self, origins): - """Add origins to the storage + @db_transaction + def origin_get(self, origin, cur=None): + """Return the id of the given origin Args: - origins: iterable of dictionaries representing the individual - origins to add. Each dict has the following keys: + origin: dictionary representing the individual + origin to find. This dict has the following keys: - type (FIXME: enum TBD): the origin type ('git', 'wget', ...) - url (bytes): the url the origin points to + + Returns: + the id of the queried origin """ - pass + query = "select id from origin where type=%s and url=%s" + + cur.execute(query, (origin['type'], origin['url'])) + + data = cur.fetchone() + if not data: + return None + else: + return data[0] + + @db_transaction + def origin_add_one(self, origin, cur=None): + """Add origin to the storage + + Args: + origin: dictionary representing the individual + origin to add. This dict has the following keys: + - type (FIXME: enum TBD): the origin type ('git', 'wget', ...) + - url (bytes): the url the origin points to + + Returns: + the id of the added origin + """ + query = "insert into origin (type, url) values (%s, %s) returning id" + + cur.execute(query, (origin['type'], origin['url'])) + + return cur.fetchone()[0] diff --git a/swh/storage/tests/test_storage.py b/swh/storage/tests/test_storage.py index 945577b5..b8e3ec5b 100644 --- a/swh/storage/tests/test_storage.py +++ b/swh/storage/tests/test_storage.py @@ -1,160 +1,171 @@ # Copyright (C) 2015 The Software Heritage developers # See the AUTHORS file at the top-level directory of this distribution # License: GNU General Public License version 3, or any later version # See top-level LICENSE file for more information import datetime import shutil import tempfile import unittest from nose.tools import istest from nose.plugins.attrib import attr from .db_testing import DbTestFixture from swh.core.hashutil import hex_to_hash from swh.storage import Storage @attr('db') class TestStorage(DbTestFixture, unittest.TestCase): def setUp(self): super().setUp() self.objroot = tempfile.mkdtemp() self.storage = Storage(self.conn, self.objroot) self.cont = { 'data': b'42\n', 'length': 3, 'sha1': hex_to_hash( '34973274ccef6ab4dfaaf86599792fa9c3fe4689'), 'sha1_git': hex_to_hash( 'd81cc0710eb6cf9efd5b920a8453e1e07157b6cd'), 'sha256': hex_to_hash( '673650f936cb3b0a2f93ce09d81be107' '48b1b203c19e8176b4eefc1964a0cf3a'), } self.cont2 = { 'data': b'4242\n', 'length': 5, 'sha1': hex_to_hash( '61c2b3a30496d329e21af70dd2d7e097046d07b7'), 'sha1_git': hex_to_hash( '36fade77193cb6d2bd826161a0979d64c28ab4fa'), 'sha256': hex_to_hash( '859f0b154fdb2d630f45e1ecae4a8629' '15435e663248bb8461d914696fc047cd'), } self.missing_cont = { 'data': b'missing\n', 'length': 8, 'sha1': hex_to_hash( 'f9c24e2abb82063a3ba2c44efd2d3c797f28ac90'), 'sha1_git': hex_to_hash( '33e45d56f88993aae6a0198013efa80716fd8919'), 'sha256': hex_to_hash( '6bbd052ab054ef222c1c87be60cd191a' 'ddedd24cc882d1f5f7f7be61dc61bb3a'), } self.dir = { 'id': b'12345678901234567890', 'entries': [ { 'name': 'foo', 'type': 'file', 'target': self.cont['sha1_git'], 'perms': 0o644, 'atime': None, 'ctime': None, 'mtime': None, }, { 'name': 'bar', 'type': 'dir', 'target': b'12345678901234567890', 'perms': 0o2000, 'atime': None, 'ctime': None, 'mtime': None, }, ], } self.revision = { 'id': b'56789012345678901234', 'message': 'hello', 'author_name': 'Nicolas Dandrimont', 'author_email': 'nicolas@example.com', 'committer_name': 'Stefano Zacchiroli', 'committer_email': 'stefano@example.com', 'parents': [b'01234567890123456789'], 'date': datetime.datetime(2015, 1, 1, 22, 0, 0), 'date_offset': 120, 'committer_date': datetime.datetime(2015, 1, 2, 22, 0, 0), 'committer_date_offset': -120, 'type': 'git', 'directory': self.dir['id'], } + self.origin = { + 'url': 'file:///dev/null', + 'type': 'git', + } + def tearDown(self): shutil.rmtree(self.objroot) super().tearDown() @istest def content_add(self): cont = self.cont self.storage.content_add([cont]) self.assertIn(cont['sha1'], self.storage.objstorage) self.cursor.execute('SELECT sha1, sha1_git, sha256, length, status' ' FROM content WHERE sha1 = %s', (cont['sha1'],)) datum = self.cursor.fetchone() self.assertEqual( (datum[0].tobytes(), datum[1].tobytes(), datum[2].tobytes(), datum[3], datum[4]), (cont['sha1'], cont['sha1_git'], cont['sha256'], cont['length'], 'visible')) @istest def content_missing(self): cont2 = self.cont2 missing_cont = self.missing_cont self.storage.content_add([cont2]) gen = self.storage.content_missing([cont2, missing_cont]) self.assertEqual(list(gen), [missing_cont['sha1']]) @istest def directory_add(self): init_missing = list(self.storage.directory_missing([self.dir['id']])) self.assertEqual([self.dir['id']], init_missing) self.storage.directory_add([self.dir]) stored_data = list(self.storage.directory_get(self.dir['id'])) data_to_store = [ (self.dir['id'], ent['type'], ent['target'], ent['name'], ent['perms'], ent['atime'], ent['ctime'], ent['mtime']) for ent in sorted(self.dir['entries'], key=lambda ent: ent['name']) ] self.assertEqual(data_to_store, stored_data) after_missing = list(self.storage.directory_missing([self.dir['id']])) self.assertEqual([], after_missing) @istest def revision_add(self): init_missing = self.storage.revision_missing([self.revision['id']]) self.assertEqual([self.revision['id']], list(init_missing)) self.storage.revision_add([self.revision]) end_missing = self.storage.revision_missing([self.revision['id']]) self.assertEqual([], list(end_missing)) + + @istest + def origin_add(self): + self.assertIsNone(self.storage.origin_get(self.origin)) + id = self.storage.origin_add_one(self.origin) + self.assertEqual(self.storage.origin_get(self.origin), id)