diff --git a/java/server/src/main/java/org/softwareheritage/graph/Graph.java b/java/server/src/main/java/org/softwareheritage/graph/Graph.java index faf513d..46ed699 100644 --- a/java/server/src/main/java/org/softwareheritage/graph/Graph.java +++ b/java/server/src/main/java/org/softwareheritage/graph/Graph.java @@ -1,230 +1,196 @@ package org.softwareheritage.graph; import java.io.IOException; import it.unimi.dsi.big.webgraph.BVGraph; import it.unimi.dsi.big.webgraph.LazyLongIterator; import org.softwareheritage.graph.Node; import org.softwareheritage.graph.SwhId; import org.softwareheritage.graph.backend.NodeIdMap; import org.softwareheritage.graph.backend.NodeTypesMap; /** * Main class storing the compressed graph and node id mappings. *
* The compressed graph is stored using the WebGraph * ecosystem. Additional mappings are necessary because Software Heritage uses string based persistent * identifiers (PID) while WebGraph uses integers internally. These two mappings (long id ↔ * PID) are used for the input (users refer to the graph using PID) and the output (convert back to * PID for users results). However, since graph traversal can be restricted depending on the node * type (see {@link AllowedEdges}), a long id → node type map is stored as well to avoid a full * PID lookup. * * @author Thibault Allançon * @version 0.0.1 * @since 0.0.1 * @see org.softwareheritage.graph.AllowedEdges * @see org.softwareheritage.graph.NodeIdMap; * @see org.softwareheritage.graph.NodeTypesMap; */ public class Graph { /** File extension for the SWH PID to long node id map */ public static final String PID_TO_NODE = ".pid2node.csv"; /** File extension for the long node id to SWH PID map */ public static final String NODE_TO_PID = ".node2pid.csv"; /** File extension for the long node id to node typ map */ public static final String NODE_TO_TYPE = ".node2type.map"; /** Compressed graph stored as a {@link it.unimi.dsi.big.webgraph.BVGraph} */ BVGraph graph; /** Transposed compressed graph (used for backward traversals) */ BVGraph graphTransposed; /** Path and basename of the compressed graph */ String path; /** Mapping long id ↔ SWH PIDs */ NodeIdMap nodeIdMap; /** Mapping long id → node types */ NodeTypesMap nodeTypesMap; /** * Constructor. * * @param path path and basename of the compressed graph to load */ public Graph(String path) throws IOException { this.graph = BVGraph.load(path); this.graphTransposed = BVGraph.load(path + "-transposed"); this.path = path; this.nodeIdMap = new NodeIdMap(path, getNbNodes()); this.nodeTypesMap = new NodeTypesMap(path); } /** * Cleans up graph resources after use. */ public void cleanUp() throws IOException { nodeIdMap.close(); } /** * Returns the graph full path. * * @return graph full path */ public String getPath() { return path; } /** * Converts {@link SwhId} node to long. * * @param swhId node specified as a {@link SwhId} * @return internal long node id * @see org.softwareheritage.graph.SwhId */ public long getNodeId(SwhId swhId) { return nodeIdMap.getNodeId(swhId); } /** * Converts long id node to {@link SwhId}. * * @param nodeId node specified as a long id * @return external SWH PID * @see org.softwareheritage.graph.SwhId */ public SwhId getSwhId(long nodeId) { return nodeIdMap.getSwhId(nodeId); } /** * Returns node type. * * @param nodeId node specified as a long id * @return corresponding node type * @see org.softwareheritage.graph.Node.Type */ public Node.Type getNodeType(long nodeId) { return nodeTypesMap.getType(nodeId); } /** * Returns number of nodes in the graph. * * @return number of nodes in the graph */ public long getNbNodes() { return graph.numNodes(); } /** * Returns number of edges in the graph. * * @return number of edges in the graph */ public long getNbEdges() { return graph.numArcs(); } - /** - * Returns list of successors of a node. - * - * @param nodeId node specified as a long id - * @return list of successors of the node, specified as a fastutil LongBigArrays - */ - public long[][] successors(long nodeId) { - return graph.successorBigArray(nodeId); - } - /** * Returns lazy iterator of successors of a node. * * @param nodeId node specified as a long id * @return lazy iterator of successors of the node, specified as a WebGraph LazyLongIterator */ - public LazyLongIterator lazySuccessors(long nodeId) { + public LazyLongIterator successors(long nodeId) { return graph.successors(nodeId); } /** * Returns the outdegree of a node. * * @param nodeId node specified as a long id * @return outdegree of a node */ public long outdegree(long nodeId) { return graph.outdegree(nodeId); } - /** - * Returns list of predecessors of a node. - * - * @param nodeId node specified as a long id - * @return list of predecessors of the node, specified as a fastutil LongBigArrays - */ - public long[][] predecessors(long nodeId) { - return graphTransposed.successorBigArray(nodeId); - } - /** * Returns lazy iterator of predecessors of a node. * * @param nodeId node specified as a long id * @return lazy iterator of predecessors of the node, specified as a WebGraph LazyLongIterator */ - public LazyLongIterator lazyPredecessors(long nodeId) { + public LazyLongIterator predecessors(long nodeId) { return graphTransposed.successors(nodeId); } /** * Returns the indegree of a node. * * @param nodeId node specified as a long id * @return indegree of a node */ public long indegree(long nodeId) { return graphTransposed.outdegree(nodeId); } /** * Returns the degree of a node, depending on graph orientation. * * @param nodeId node specified as a long id * @param useTransposed boolean value to use transposed graph * @return degree of a node */ public long degree(long nodeId, boolean useTransposed) { return (useTransposed) ? indegree(nodeId) : outdegree(nodeId); } - /** - * Returns the neighbors of a node (as a list), depending on graph orientation. - * - * @param nodeId node specified as a long id - * @param useTransposed boolean value to use transposed graph - * @return list of neighbors of the node, specified as a fastutil LongBigArrays - */ - public long[][] neighbors(long nodeId, boolean useTransposed) { - return (useTransposed) ? predecessors(nodeId) : successors(nodeId); - } - /** * Returns the neighbors of a node (as a lazy iterator), depending on graph orientation. * * @param nodeId node specified as a long id * @param useTransposed boolean value to use transposed graph * @return lazy iterator of neighbors of the node, specified as a WebGraph LazyLongIterator */ - public LazyLongIterator lazyNeighbors(long nodeId, boolean useTransposed) { - return (useTransposed) ? lazyPredecessors(nodeId) : lazySuccessors(nodeId); + public LazyLongIterator neighbors(long nodeId, boolean useTransposed) { + return (useTransposed) ? predecessors(nodeId) : successors(nodeId); } } diff --git a/java/server/src/main/java/org/softwareheritage/graph/Neighbors.java b/java/server/src/main/java/org/softwareheritage/graph/Neighbors.java index 51de885..43ba9c8 100644 --- a/java/server/src/main/java/org/softwareheritage/graph/Neighbors.java +++ b/java/server/src/main/java/org/softwareheritage/graph/Neighbors.java @@ -1,98 +1,88 @@ package org.softwareheritage.graph; import java.util.Iterator; -import it.unimi.dsi.fastutil.longs.LongBigArrays; +import it.unimi.dsi.big.webgraph.LazyLongIterator; import org.softwareheritage.graph.AllowedEdges; import org.softwareheritage.graph.Graph; /** * Iterator class to go over a node neighbors in the graph. *
* Wrapper iterator class to easily deal with {@link AllowedEdges} during traversals.
*
* @author Thibault Allançon
* @version 0.0.1
* @since 0.0.1
* @see org.softwareheritage.graph.AllowedEdges
*/
public class Neighbors implements Iterable