diff --git a/api/server/src/test/dataset/generate_graph.sh b/api/server/src/test/dataset/generate_graph.sh index ffc7f07..d5aee4c 100755 --- a/api/server/src/test/dataset/generate_graph.sh +++ b/api/server/src/test/dataset/generate_graph.sh @@ -1,21 +1,22 @@ #!/bin/bash # Build Docker work environment toplevel_dir=`git rev-parse --show-toplevel` mkdir -p dockerfiles cp -r $toplevel_dir/dockerfiles/ . docker build --tag swh-graph-test dockerfiles # Setup input for compression script tr ' ' '\n' < graph.edges.csv | sort -u > graph.nodes.csv gzip --force --keep graph.edges.csv gzip --force --keep graph.nodes.csv # Setup output rm -f stderr stdout docker run \ --name swh-graph-test --rm --tty --interactive \ --volume $(pwd):/data swh-graph-test:latest \ ./scripts/compress_graph.sh \ - --input /data/graph --output /data --lib /swh/graph-lib + --input /data/graph --output /data --lib /swh/graph-lib \ + --stdout /data/stdout --stderr /data/stderr diff --git a/dockerfiles/scripts/compress_graph.sh b/dockerfiles/scripts/compress_graph.sh index 7ad2168..fe43ef4 100755 --- a/dockerfiles/scripts/compress_graph.sh +++ b/dockerfiles/scripts/compress_graph.sh @@ -1,82 +1,87 @@ #!/bin/bash usage() { - echo "Usage: --input --output --lib " + echo "Usage: --input --output --lib " echo " options:" echo " -t, --tmp (default to /tmp/)" + echo " --stdout (default to ./stdout)" + echo " --stderr (default to ./stderr)" exit 1 } graph_path="" out_dir="" -lib_path="" +lib_dir="" tmp_dir="/tmp/" +stdout_file="stdout" +stderr_file="stderr" while (( "$#" )); do case "$1" in -i|--input) shift; graph_path=$1;; -o|--output) shift; out_dir=$1;; - -l|--lib) shift; lib_path=$1;; + -l|--lib) shift; lib_dir=$1;; -t|--tmp) shift; tmp_dir=$1;; + --stdout) shift; stdout_file=$1;; + --stderr) shift; stderr_file=$1;; *) usage;; esac shift done -if [[ -z $graph_path || -z $out_dir || -z $lib_path ]]; then +if [[ -z $graph_path || -z $out_dir || -z $lib_dir ]]; then usage fi +if [[ -f "$stdout_file" || -f "$stderr_file" ]]; then + echo "Cannot overwrite previous compression stdout/stderr files" + exit 1 +fi + dataset=$(basename $graph_path) compr_graph_path="$out_dir/$dataset" -stdout_file="$out_dir/stdout" -stderr_file="$out_dir/stderr" mkdir -p $out_dir mkdir -p $tmp_dir -if [[ -f "$stdout_file" || -f "$stderr_file" ]]; then - echo "Cannot overwrite compression stdout/stderr files" - exit 1 -fi java_cmd () { - /usr/bin/time -v java -cp $lib_path/'*' $* + /usr/bin/time -v java -cp $lib_dir/'*' $* } { # Build a function (MPH) that maps node names to node numbers in # lexicographic order (output: .mph) java_cmd it.unimi.dsi.sux4j.mph.GOVMinimalPerfectHashFunction \ --zipped $compr_graph_path.mph --temp-dir $tmp_dir \ $graph_path.nodes.csv.gz ; # Build the graph in BVGraph format (output: .{graph,offsets,properties}) java_cmd it.unimi.dsi.big.webgraph.ScatteredArcsASCIIGraph \ --function $compr_graph_path.mph --temp-dir $tmp_dir \ --zipped $compr_graph_path-bv < $graph_path.edges.csv.gz ; # Build the offset big-list file to load the graph faster (output: .obl) java_cmd it.unimi.dsi.big.webgraph.BVGraph \ --list $compr_graph_path-bv ; # Find a better permutation using a BFS traversal order (output: .order) java_cmd it.unimi.dsi.law.graph.BFSBig \ $compr_graph_path-bv $compr_graph_path.order ; # Permute the graph accordingly batch_size=1000000000 java_cmd it.unimi.dsi.big.webgraph.Transform mapOffline \ $compr_graph_path-bv $compr_graph_path \ $compr_graph_path.order $batch_size ; java_cmd it.unimi.dsi.big.webgraph.BVGraph \ --list $compr_graph_path ; # Compute graph statistics (output: .{indegree,outdegree,stats}) java_cmd it.unimi.dsi.big.webgraph.Stats $compr_graph_path ; # Create transposed graph (to allow backward traversal) java_cmd it.unimi.dsi.big.webgraph.Transform transposeOffline \ $compr_graph_path $compr_graph_path-transposed $batch_size ; java_cmd it.unimi.dsi.big.webgraph.BVGraph \ --list $compr_graph_path-transposed ; } >> $stdout_file 2>> $stderr_file echo "Graph compression done."