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storage.py
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# Copyright (C) 2015 The Software Heritage developers
# See the AUTHORS file at the top-level directory of this distribution
# License: GNU General Public License version 3, or any later version
# See top-level LICENSE file for more information
import functools
import itertools
import psycopg2
from collections import defaultdict
from operator import itemgetter
from .db import Db
from .objstorage import ObjStorage
from swh.core.hashutil import ALGORITHMS
SWH_HASH_KEYS = ALGORITHMS
def db_transaction(meth):
"""decorator to execute Storage methods within DB transactions
The decorated method must accept a `cur` keyword argument
"""
@functools.wraps(meth)
def _meth(self, *args, **kwargs):
with self.db.transaction() as cur:
return meth(self, *args, cur=cur, **kwargs)
return _meth
def db_transaction_generator(meth):
"""decorator to execute Storage methods within DB transactions, while
returning a generator
The decorated method must accept a `cur` keyword argument
"""
@functools.wraps(meth)
def _meth(self, *args, **kwargs):
with self.db.transaction() as cur:
yield from meth(self, *args, cur=cur, **kwargs)
return _meth
class Storage():
"""SWH storage proxy, encompassing DB and object storage
"""
def __init__(self, db_conn, obj_root):
"""
Args:
db_conn: either a libpq connection string, or a psycopg2 connection
obj_root: path to the root of the object storage
"""
if isinstance(db_conn, psycopg2.extensions.connection):
self.db = Db(db_conn)
else:
self.db = Db.connect(db_conn)
self.objstorage = ObjStorage(obj_root)
def content_add(self, content):
"""Add content blobs to the storage
Note: in case of DB errors, objects might have already been added to
the object storage and will not be removed. Since addition to the
object storage is idempotent, that should not be a problem.
Args:
content: iterable of dictionaries representing individual pieces of
content to add. Each dictionary has the following keys:
- data (bytes): the actual content
- length (int): content length (default: -1)
- one key for each checksum algorithm in
swh.core.hashutil.ALGORITHMS, mapped to the corresponding
checksum
- status (str): one of visible, hidden, absent
- reason (str): if status = absent, the reason why
- origin (int): if status = absent, the origin we saw the
content in
"""
db = self.db
content_by_status = defaultdict(list)
for d in content:
if 'status' not in d:
d['status'] = 'visible'
if 'length' not in d:
d['length'] = -1
content_by_status[d['status']].append(d)
content_with_data = content_by_status['visible']
content_without_data = content_by_status['absent']
missing_content = set(self.content_missing(content_with_data))
missing_skipped = set(
sha1_git for sha1, sha1_git, sha256
in self.skipped_content_missing(content_without_data))
with db.transaction() as cur:
if missing_content:
# create temporary table for metadata injection
db.mktemp('content', cur)
def add_to_objstorage(cont):
self.objstorage.add_bytes(cont['data'],
obj_id=cont['sha1'])
content_filtered = (cont for cont in content_with_data
if cont['sha1'] in missing_content)
db.copy_to(content_filtered, 'tmp_content',
['sha1', 'sha1_git', 'sha256', 'length', 'status'],
cur, item_cb=add_to_objstorage)
# move metadata in place
db.content_add_from_temp(cur)
if missing_skipped:
missing_filtered = (cont for cont in content_without_data
if cont['sha1_git'] in missing_skipped)
db.mktemp('skipped_content', cur)
db.copy_to(missing_filtered, 'tmp_skipped_content',
['sha1', 'sha1_git', 'sha256', 'length',
'reason', 'status', 'origin'], cur)
# move metadata in place
db.skipped_content_add_from_temp(cur)
@db_transaction_generator
def content_missing(self, content, key_hash='sha1', cur=None):
"""List content missing from storage
Args:
content: iterable of dictionaries containing one key for each
checksum algorithm in swh.core.hashutil.ALGORITHMS, mapped to
the corresponding checksum, and a length key mapped to the
content length.
key_hash: the name of the hash used as key (default: 'sha1')
Returns:
an iterable of `key_hash`es missing from the storage
Raises:
TODO: an exception when we get a hash collision.
"""
db = self.db
keys = ['sha1', 'sha1_git', 'sha256']
if key_hash not in keys:
raise ValueError("key_hash should be one of %s" % keys)
key_hash_idx = keys.index(key_hash)
# Create temporary table for metadata injection
db.mktemp('content', cur)
db.copy_to(content, 'tmp_content', keys + ['length'], cur)
for obj in db.content_missing_from_temp(cur):
yield obj[key_hash_idx]
@db_transaction_generator
def skipped_content_missing(self, content, cur=None):
"""List skipped_content missing from storage
Args:
content: iterable of dictionaries containing the data for each
checksum algorithm.
Returns:
an iterable of signatures missing from the storage
"""
keys = ['sha1', 'sha1_git', 'sha256']
db = self.db
db.mktemp('skipped_content', cur)
db.copy_to(content, 'tmp_skipped_content',
keys + ['length', 'reason'], cur)
yield from db.skipped_content_missing_from_temp(cur)
@db_transaction
def content_find(self, content, cur=None):
"""Predicate to check the presence of a content's hashes.
Args:
content: a dictionary entry representing one content hash.
The dictionary key is one of swh.core.hashutil.ALGORITHMS.
The value mapped to the corresponding checksum.
Returns:
a boolean indicator of presence
Raises:
ValueError in case the key of the dictionary is not sha1 nor sha256
"""
db = self.db
if content == {}:
raise ValueError('Key must be one of %s.' % SWH_HASH_KEYS)
for key in content.keys():
if key not in SWH_HASH_KEYS:
raise ValueError('Key must be one of %s.' % SWH_HASH_KEYS)
# format the output
found_hash = db.content_find(sha1=content.get('sha1'),
sha1_git=content.get('sha1_git'),
sha256=content.get('sha256'),
cur=cur)
if len(found_hash) > 0:
return found_hash != (None, None, None)
return False
Returns:
a boolean indicator of presence
Raises:
ValueError in case the key of the dictionary is not sha1 nor sha256
"""
db = self.db
if content == {}:
raise ValueError('Key must be one of sha1, git_sha1, sha256.')
for key in content.keys():
if key not in SWH_HASH_KEYS:
raise ValueError('Key must be one of sha1, git_sha1, sha256.')
# format the output
found_hash = db.content_find(sha1=content.get('sha1'),
sha1_git=content.get('sha1_git'),
sha256=content.get('sha256'),
cur=cur)
if len(found_hash) > 0:
return found_hash != (None, None, None)
return False
def directory_add(self, directories):
"""Add directories to the storage
Args:
directories: iterable of dictionaries representing the individual
directories to add. Each dict has the following keys:
- id (sha1_git): the id of the directory to add
- entries (list): list of dicts for each entry in the
directory. Each dict has the following keys:
- name (bytes)
- type (one of 'file', 'dir', 'rev'):
type of the directory entry (file, directory, revision)
- target (sha1_git): id of the object pointed at by the
directory entry
- perms (int): entry permissions
- atime (datetime.DateTime): entry access time
- ctime (datetime.DateTime): entry creation time
- mtime (datetime.DateTime): entry modification time
"""
dirs = set()
dir_entries = {
'file': defaultdict(list),
'dir': defaultdict(list),
'rev': defaultdict(list),
}
for cur_dir in directories:
dir_id = cur_dir['id']
dirs.add(dir_id)
for entry in cur_dir['entries']:
entry['dir_id'] = dir_id
dir_entries[entry['type']][dir_id].append(entry)
dirs_missing = set(self.directory_missing(dirs))
if not dirs_missing:
return
db = self.db
with db.transaction() as cur:
dirs_missing_dict = ({'id': dir} for dir in dirs_missing)
db.copy_to(dirs_missing_dict, 'directory', ['id'], cur)
for entry_type, entry_list in dir_entries.items():
entries = itertools.chain.from_iterable(
entries_for_dir
for dir_id, entries_for_dir
in entry_list.items()
if dir_id in dirs_missing)
db.mktemp_dir_entry(entry_type)
db.copy_to(
entries,
'tmp_directory_entry_%s' % entry_type,
['target', 'name', 'perms', 'atime',
'mtime', 'ctime', 'dir_id'],
cur,
)
cur.execute('SELECT swh_directory_entry_%s_add()' % entry_type)
@db_transaction_generator
def directory_missing(self, directories, cur):
"""List directories missing from storage
Args: an iterable of directory ids
Returns: a list of missing directory ids
"""
db = self.db
# Create temporary table for metadata injection
db.mktemp('directory', cur)
directories_dicts = ({'id': dir} for dir in directories)
db.copy_to(directories_dicts, 'tmp_directory', ['id'], cur)
for obj in db.directory_missing_from_temp(cur):
yield obj[0]
def directory_get(self, directory):
"""Get the entries for one directory"""
yield from self.db.directory_walk_one(directory)
def revision_add(self, revisions):
"""Add revisions to the storage
Args:
revisions: iterable of dictionaries representing the individual
revisions to add. Each dict has the following keys:
- id (sha1_git): id of the revision to add
- date (datetime.DateTime): date the revision was written
- date_offset (int): offset from UTC in minutes the revision
was written
- committer_date (datetime.DateTime): date the revision got
added to the origin
- committer_date_offset (int): offset from UTC in minutes the
revision was added to the origin
- type (one of 'git', 'tar'): type of the revision added
- directory (sha1_git): the directory the revision points at
- message (bytes): the message associated with the revision
- author_name (bytes): the name of the revision author
- author_email (bytes): the email of the revision author
- committer_name (bytes): the name of the revision committer
- committer_email (bytes): the email of the revision committer
- parents (list of sha1_git): the parents of this revision
"""
db = self.db
parents = {}
for revision in revisions:
id = revision['id']
cur_parents = enumerate(revision.get('parents', []))
parents[id] = [{
'id': id,
'parent_id': parent,
'parent_rank': i
} for i, parent in cur_parents]
revisions_missing = list(self.revision_missing(parents.keys()))
if not revisions_missing:
return
with db.transaction() as cur:
db.mktemp_revision(cur)
revisions_filtered = (revision for revision in revisions
if revision['id'] in revisions_missing)
db.copy_to(revisions_filtered, 'tmp_revision',
['id', 'date', 'date_offset', 'committer_date',
'committer_date_offset', 'type', 'directory',
'message', 'author_name', 'author_email',
'committer_name', 'committer_email'],
cur)
db.revision_add_from_temp(cur)
parents_filtered = itertools.chain.from_iterable(
parents[id] for id in revisions_missing)
db.copy_to(parents_filtered, 'revision_history',
['id', 'parent_id', 'parent_rank'], cur)
@db_transaction_generator
def revision_missing(self, revisions, cur):
"""List revisions missing from storage
Args: an iterable of revision ids
Returns: a list of missing revision ids
"""
db = self.db
# Create temporary table for metadata injection
db.mktemp('revision', cur)
revisions_dicts = ({'id': dir, 'type': 'git'} for dir in revisions)
db.copy_to(revisions_dicts, 'tmp_revision', ['id', 'type'], cur)
for obj in db.revision_missing_from_temp(cur):
yield obj[0]
def release_add(self, releases):
"""Add releases to the storage
Args:
releases: iterable of dictionaries representing the individual
releases to add. Each dict has the following keys:
- id (sha1_git): id of the release to add
- revision (sha1_git): id of the revision the release points
to
- date (datetime.DateTime): the date the release was made
- date_offset (int): offset from UTC in minutes the release was
made
- name (bytes): the name of the release
- comment (bytes): the comment associated with the release
- author_name (bytes): the name of the release author
- author_email (bytes): the email of the release author
"""
db = self.db
release_ids = set(release['id'] for release in releases)
releases_missing = list(self.release_missing(release_ids))
if not releases_missing:
return
with db.transaction() as cur:
db.mktemp_release(cur)
releases_filtered = (release for release in releases
if release['id'] in releases_missing)
db.copy_to(releases_filtered, 'tmp_release',
['id', 'revision', 'date', 'date_offset', 'name',
'comment', 'author_name', 'author_email'], cur)
db.release_add_from_temp(cur)
@db_transaction_generator
def release_missing(self, releases, cur=None):
"""List releases missing from storage
Args: an iterable of release ids
Returns: a list of missing release ids
"""
db = self.db
# Create temporary table for metadata injection
db.mktemp('release', cur)
releases_dicts = ({'id': rel} for rel in releases)
db.copy_to(releases_dicts, 'tmp_release', ['id'], cur)
for obj in db.release_missing_from_temp(cur):
yield obj[0]
@db_transaction
def occurrence_add(self, occurrences, cur=None):
"""Add occurrences to the storage
Args:
occurrences: iterable of dictionaries representing the individual
occurrences to add. Each dict has the following keys:
- origin (int): id of the origin corresponding to the
occurrence
- branch (str): the reference name of the occurrence
- revision (sha1_git): the id of the revision pointed to by
the occurrence
- authority (int): id of the authority giving the validity
- validity (datetime.DateTime): the validity date for the given
occurrence
"""
db = self.db
processed = []
for occurrence in occurrences:
occ = occurrence.copy()
occ['validity'] = '[%s,infinity)' % str(occ['validity'])
processed.append(occ)
# XXX: will fail on second execution
db.copy_to(processed, 'occurrence_history',
['origin', 'branch', 'revision', 'authority', 'validity'],
cur)
@db_transaction
def origin_get(self, origin, cur=None):
"""Return the id of the given origin
Args:
origin: dictionary representing the individual
origin to find. This dict has the following keys:
- type (FIXME: enum TBD): the origin type ('git', 'wget', ...)
- url (bytes): the url the origin points to
Returns:
the id of the queried origin
"""
query = "select id from origin where type=%s and url=%s"
cur.execute(query, (origin['type'], origin['url']))
data = cur.fetchone()
if not data:
return None
else:
return data[0]
@db_transaction
def origin_add_one(self, origin, cur=None):
"""Add origin to the storage
Args:
origin: dictionary representing the individual
origin to add. This dict has the following keys:
- type (FIXME: enum TBD): the origin type ('git', 'wget', ...)
- url (bytes): the url the origin points to
Returns:
the id of the added origin, or of the identical one that already
exists.
"""
query = "select id from origin where type=%s and url=%s"
cur.execute(query, (origin['type'], origin['url']))
data = cur.fetchone()
if data:
return data[0]
insert = """insert into origin (type, url) values (%s, %s)
returning id"""
cur.execute(insert, (origin['type'], origin['url']))
return cur.fetchone()[0]

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