diff --git a/swh/storage/storage.py b/swh/storage/storage.py index e7ba2a4a8..1d5a2685a 100644 --- a/swh/storage/storage.py +++ b/swh/storage/storage.py @@ -1,1535 +1,1535 @@ # Copyright (C) 2015-2018 The Software Heritage developers # See the AUTHORS file at the top-level directory of this distribution # License: GNU General Public License version 3, or any later version # See top-level LICENSE file for more information from collections import defaultdict from concurrent.futures import ThreadPoolExecutor import datetime import itertools import json import warnings import dateutil.parser import psycopg2 import psycopg2.pool from . import converters from .common import db_transaction_generator, db_transaction from .db import Db from .exc import StorageDBError from .algos import diff from swh.model.hashutil import ALGORITHMS, hash_to_bytes from swh.objstorage import get_objstorage from swh.objstorage.exc import ObjNotFoundError # Max block size of contents to return BULK_BLOCK_CONTENT_LEN_MAX = 10000 EMPTY_SNAPSHOT_ID = hash_to_bytes('1a8893e6a86f444e8be8e7bda6cb34fb1735a00e') """Identifier for the empty snapshot""" class Storage(): """SWH storage proxy, encompassing DB and object storage """ def __init__(self, db, objstorage, min_pool_conns=1, max_pool_conns=10): """ Args: db_conn: either a libpq connection string, or a psycopg2 connection obj_root: path to the root of the object storage """ try: if isinstance(db, psycopg2.extensions.connection): self._pool = None self._db = Db(db) else: self._pool = psycopg2.pool.ThreadedConnectionPool( min_pool_conns, max_pool_conns, db ) self._db = None except psycopg2.OperationalError as e: raise StorageDBError(e) self.objstorage = get_objstorage(**objstorage) def get_db(self): if self._db: return self._db else: return Db.from_pool(self._pool) def check_config(self, *, check_write): """Check that the storage is configured and ready to go.""" if not self.objstorage.check_config(check_write=check_write): return False # Check permissions on one of the tables with self.get_db().transaction() as cur: if check_write: check = 'INSERT' else: check = 'SELECT' cur.execute( "select has_table_privilege(current_user, 'content', %s)", (check,) ) return cur.fetchone()[0] return True def content_add(self, content): """Add content blobs to the storage Note: in case of DB errors, objects might have already been added to the object storage and will not be removed. Since addition to the object storage is idempotent, that should not be a problem. Args: content (iterable): iterable of dictionaries representing individual pieces of content to add. Each dictionary has the following keys: - data (bytes): the actual content - length (int): content length (default: -1) - one key for each checksum algorithm in :data:`swh.model.hashutil.ALGORITHMS`, mapped to the corresponding checksum - status (str): one of visible, hidden, absent - reason (str): if status = absent, the reason why - origin (int): if status = absent, the origin we saw the content in """ db = self.get_db() def _unique_key(hash, keys=db.content_hash_keys): """Given a hash (tuple or dict), return a unique key from the aggregation of keys. """ if isinstance(hash, tuple): return hash return tuple([hash[k] for k in keys]) content_by_status = defaultdict(list) for d in content: if 'status' not in d: d['status'] = 'visible' if 'length' not in d: d['length'] = -1 content_by_status[d['status']].append(d) content_with_data = content_by_status['visible'] content_without_data = content_by_status['absent'] missing_content = set(self.content_missing(content_with_data)) missing_skipped = set(_unique_key(hashes) for hashes in self.skipped_content_missing( content_without_data)) def add_to_objstorage(): data = { cont['sha1']: cont['data'] for cont in content_with_data if cont['sha1'] in missing_content } self.objstorage.add_batch(data) with db.transaction() as cur: with ThreadPoolExecutor(max_workers=1) as executor: added_to_objstorage = executor.submit(add_to_objstorage) if missing_content: # create temporary table for metadata injection db.mktemp('content', cur) content_filtered = (cont for cont in content_with_data if cont['sha1'] in missing_content) db.copy_to(content_filtered, 'tmp_content', db.content_get_metadata_keys, cur) # move metadata in place try: db.content_add_from_temp(cur) except psycopg2.IntegrityError as e: from . import HashCollision if e.diag.sqlstate == '23505' and \ e.diag.table_name == 'content': constaint_to_hash_name = { 'content_pkey': 'sha1', 'content_sha1_git_idx': 'sha1_git', 'content_sha256_idx': 'sha256', } colliding_hash_name = constaint_to_hash_name \ .get(e.diag.constraint_name) raise HashCollision(colliding_hash_name) else: raise if missing_skipped: missing_filtered = ( cont for cont in content_without_data if _unique_key(cont) in missing_skipped ) db.mktemp('skipped_content', cur) db.copy_to(missing_filtered, 'tmp_skipped_content', db.skipped_content_keys, cur) # move metadata in place db.skipped_content_add_from_temp(cur) # Wait for objstorage addition before returning from the # transaction, bubbling up any exception added_to_objstorage.result() @db_transaction() def content_update(self, content, keys=[], db=None, cur=None): """Update content blobs to the storage. Does nothing for unknown contents or skipped ones. Args: content (iterable): iterable of dictionaries representing individual pieces of content to update. Each dictionary has the following keys: - data (bytes): the actual content - length (int): content length (default: -1) - one key for each checksum algorithm in :data:`swh.model.hashutil.ALGORITHMS`, mapped to the corresponding checksum - status (str): one of visible, hidden, absent keys (list): List of keys (str) whose values needs an update, e.g., new hash column """ # TODO: Add a check on input keys. How to properly implement # this? We don't know yet the new columns. db.mktemp('content', cur) select_keys = list(set(db.content_get_metadata_keys).union(set(keys))) db.copy_to(content, 'tmp_content', select_keys, cur) db.content_update_from_temp(keys_to_update=keys, cur=cur) def content_get(self, content): """Retrieve in bulk contents and their data. This generator yields exactly as many items than provided sha1 identifiers, but callers should not assume this will always be true. It may also yield `None` values in case an object was not found. Args: content: iterables of sha1 Yields: Dict[str, bytes]: Generates streams of contents as dict with their raw data: - sha1 (bytes): content id - data (bytes): content's raw data Raises: ValueError in case of too much contents are required. cf. BULK_BLOCK_CONTENT_LEN_MAX """ # FIXME: Make this method support slicing the `data`. if len(content) > BULK_BLOCK_CONTENT_LEN_MAX: raise ValueError( "Send at maximum %s contents." % BULK_BLOCK_CONTENT_LEN_MAX) for obj_id in content: try: data = self.objstorage.get(obj_id) except ObjNotFoundError: yield None continue yield {'sha1': obj_id, 'data': data} @db_transaction() def content_get_range(self, start, end, limit=1000, db=None, cur=None): """Retrieve contents within range [start, end] bound by limit. Note that this function may return more than one blob per hash. The limit is enforced with multiplicity (ie. two blobs with the same hash will count twice toward the limit). Args: **start** (bytes): Starting identifier range (expected smaller than end) **end** (bytes): Ending identifier range (expected larger than start) **limit** (int): Limit result (default to 1000) Returns: a dict with keys: - contents [dict]: iterable of contents in between the range. - next (bytes): There remains content in the range starting from this next sha1 """ if limit is None: raise ValueError('Development error: limit should not be None') contents = [] next_content = None for counter, content_row in enumerate( db.content_get_range(start, end, limit+1, cur)): content = dict(zip(db.content_get_metadata_keys, content_row)) if counter >= limit: # take the last commit for the next page starting from this next_content = content['sha1'] break contents.append(content) return { 'contents': contents, 'next': next_content, } @db_transaction_generator(statement_timeout=500) def content_get_metadata(self, content, db=None, cur=None): """Retrieve content metadata in bulk Args: content: iterable of content identifiers (sha1) Returns: an iterable with content metadata corresponding to the given ids """ for metadata in db.content_get_metadata_from_sha1s(content, cur): yield dict(zip(db.content_get_metadata_keys, metadata)) @db_transaction_generator() def content_missing(self, content, key_hash='sha1', db=None, cur=None): """List content missing from storage Args: content ([dict]): iterable of dictionaries whose keys are either 'length' or an item of :data:`swh.model.hashutil.ALGORITHMS`; mapped to the corresponding checksum (or length). key_hash (str): name of the column to use as hash id result (default: 'sha1') Returns: iterable ([bytes]): missing content ids (as per the key_hash column) Raises: TODO: an exception when we get a hash collision. """ keys = db.content_hash_keys if key_hash not in keys: raise ValueError("key_hash should be one of %s" % keys) key_hash_idx = keys.index(key_hash) if not content: return for obj in db.content_missing_from_list(content, cur): yield obj[key_hash_idx] @db_transaction_generator() def content_missing_per_sha1(self, contents, db=None, cur=None): """List content missing from storage based only on sha1. Args: contents: Iterable of sha1 to check for absence. Returns: iterable: missing ids Raises: TODO: an exception when we get a hash collision. """ for obj in db.content_missing_per_sha1(contents, cur): yield obj[0] @db_transaction_generator() def skipped_content_missing(self, content, db=None, cur=None): """List skipped_content missing from storage Args: content: iterable of dictionaries containing the data for each checksum algorithm. Returns: iterable: missing signatures """ keys = db.content_hash_keys db.mktemp('skipped_content', cur) db.copy_to(content, 'tmp_skipped_content', keys + ['length', 'reason'], cur) yield from db.skipped_content_missing_from_temp(cur) @db_transaction() def content_find(self, content, db=None, cur=None): """Find a content hash in db. Args: content: a dictionary representing one content hash, mapping checksum algorithm names (see swh.model.hashutil.ALGORITHMS) to checksum values Returns: a triplet (sha1, sha1_git, sha256) if the content exist or None otherwise. Raises: ValueError: in case the key of the dictionary is not sha1, sha1_git nor sha256. """ if not set(content).intersection(ALGORITHMS): raise ValueError('content keys must contain at least one of: ' 'sha1, sha1_git, sha256, blake2s256') c = db.content_find(sha1=content.get('sha1'), sha1_git=content.get('sha1_git'), sha256=content.get('sha256'), blake2s256=content.get('blake2s256'), cur=cur) if c: return dict(zip(db.content_find_cols, c)) return None def directory_add(self, directories): """Add directories to the storage Args: directories (iterable): iterable of dictionaries representing the individual directories to add. Each dict has the following keys: - id (sha1_git): the id of the directory to add - entries (list): list of dicts for each entry in the directory. Each dict has the following keys: - name (bytes) - type (one of 'file', 'dir', 'rev'): type of the directory entry (file, directory, revision) - target (sha1_git): id of the object pointed at by the directory entry - perms (int): entry permissions """ dirs = set() dir_entries = { 'file': defaultdict(list), 'dir': defaultdict(list), 'rev': defaultdict(list), } for cur_dir in directories: dir_id = cur_dir['id'] dirs.add(dir_id) for src_entry in cur_dir['entries']: entry = src_entry.copy() entry['dir_id'] = dir_id dir_entries[entry['type']][dir_id].append(entry) dirs_missing = set(self.directory_missing(dirs)) if not dirs_missing: return db = self.get_db() with db.transaction() as cur: # Copy directory ids dirs_missing_dict = ({'id': dir} for dir in dirs_missing) db.mktemp('directory', cur) db.copy_to(dirs_missing_dict, 'tmp_directory', ['id'], cur) # Copy entries for entry_type, entry_list in dir_entries.items(): entries = itertools.chain.from_iterable( entries_for_dir for dir_id, entries_for_dir in entry_list.items() if dir_id in dirs_missing) db.mktemp_dir_entry(entry_type) db.copy_to( entries, 'tmp_directory_entry_%s' % entry_type, ['target', 'name', 'perms', 'dir_id'], cur, ) # Do the final copy db.directory_add_from_temp(cur) @db_transaction_generator() def directory_missing(self, directories, db=None, cur=None): """List directories missing from storage Args: directories (iterable): an iterable of directory ids Yields: missing directory ids """ for obj in db.directory_missing_from_list(directories, cur): yield obj[0] @db_transaction_generator(statement_timeout=20000) def directory_ls(self, directory, recursive=False, db=None, cur=None): """Get entries for one directory. Args: - directory: the directory to list entries from. - recursive: if flag on, this list recursively from this directory. Returns: List of entries for such directory. If `recursive=True`, names in the path of a dir/file not at the root are concatenated with a slash (`/`). """ if recursive: res_gen = db.directory_walk(directory, cur=cur) else: res_gen = db.directory_walk_one(directory, cur=cur) for line in res_gen: yield dict(zip(db.directory_ls_cols, line)) @db_transaction(statement_timeout=2000) def directory_entry_get_by_path(self, directory, paths, db=None, cur=None): """Get the directory entry (either file or dir) from directory with path. Args: - directory: sha1 of the top level directory - paths: path to lookup from the top level directory. From left (top) to right (bottom). Returns: The corresponding directory entry if found, None otherwise. """ res = db.directory_entry_get_by_path(directory, paths, cur) if res: return dict(zip(db.directory_ls_cols, res)) def revision_add(self, revisions): """Add revisions to the storage Args: revisions (Iterable[dict]): iterable of dictionaries representing the individual revisions to add. Each dict has the following keys: - **id** (:class:`sha1_git`): id of the revision to add - **date** (:class:`dict`): date the revision was written - **committer_date** (:class:`dict`): date the revision got added to the origin - **type** (one of 'git', 'tar'): type of the revision added - **directory** (:class:`sha1_git`): the directory the revision points at - **message** (:class:`bytes`): the message associated with the revision - **author** (:class:`Dict[str, bytes]`): dictionary with keys: name, fullname, email - **committer** (:class:`Dict[str, bytes]`): dictionary with keys: name, fullname, email - **metadata** (:class:`jsonb`): extra information as dictionary - **synthetic** (:class:`bool`): revision's nature (tarball, directory creates synthetic revision`) - **parents** (:class:`list[sha1_git]`): the parents of this revision date dictionaries have the form defined in :mod:`swh.model`. """ db = self.get_db() revisions_missing = set(self.revision_missing( set(revision['id'] for revision in revisions))) if not revisions_missing: return with db.transaction() as cur: db.mktemp_revision(cur) revisions_filtered = ( converters.revision_to_db(revision) for revision in revisions if revision['id'] in revisions_missing) parents_filtered = [] db.copy_to( revisions_filtered, 'tmp_revision', db.revision_add_cols, cur, lambda rev: parents_filtered.extend(rev['parents'])) db.revision_add_from_temp(cur) db.copy_to(parents_filtered, 'revision_history', ['id', 'parent_id', 'parent_rank'], cur) @db_transaction_generator() def revision_missing(self, revisions, db=None, cur=None): """List revisions missing from storage Args: revisions (iterable): revision ids Yields: missing revision ids """ if not revisions: return for obj in db.revision_missing_from_list(revisions, cur): yield obj[0] - @db_transaction_generator(statement_timeout=500) + @db_transaction_generator(statement_timeout=1000) def revision_get(self, revisions, db=None, cur=None): """Get all revisions from storage Args: revisions: an iterable of revision ids Returns: iterable: an iterable of revisions as dictionaries (or None if the revision doesn't exist) """ for line in db.revision_get_from_list(revisions, cur): data = converters.db_to_revision( dict(zip(db.revision_get_cols, line)) ) if not data['type']: yield None continue yield data @db_transaction_generator(statement_timeout=2000) def revision_log(self, revisions, limit=None, db=None, cur=None): """Fetch revision entry from the given root revisions. Args: revisions: array of root revision to lookup limit: limitation on the output result. Default to None. Yields: List of revision log from such revisions root. """ for line in db.revision_log(revisions, limit, cur): data = converters.db_to_revision( dict(zip(db.revision_get_cols, line)) ) if not data['type']: yield None continue yield data @db_transaction_generator(statement_timeout=2000) def revision_shortlog(self, revisions, limit=None, db=None, cur=None): """Fetch the shortlog for the given revisions Args: revisions: list of root revisions to lookup limit: depth limitation for the output Yields: a list of (id, parents) tuples. """ yield from db.revision_shortlog(revisions, limit, cur) def release_add(self, releases): """Add releases to the storage Args: releases (Iterable[dict]): iterable of dictionaries representing the individual releases to add. Each dict has the following keys: - **id** (:class:`sha1_git`): id of the release to add - **revision** (:class:`sha1_git`): id of the revision the release points to - **date** (:class:`dict`): the date the release was made - **name** (:class:`bytes`): the name of the release - **comment** (:class:`bytes`): the comment associated with the release - **author** (:class:`Dict[str, bytes]`): dictionary with keys: name, fullname, email the date dictionary has the form defined in :mod:`swh.model`. """ db = self.get_db() release_ids = set(release['id'] for release in releases) releases_missing = set(self.release_missing(release_ids)) if not releases_missing: return with db.transaction() as cur: db.mktemp_release(cur) releases_filtered = ( converters.release_to_db(release) for release in releases if release['id'] in releases_missing ) db.copy_to(releases_filtered, 'tmp_release', db.release_add_cols, cur) db.release_add_from_temp(cur) @db_transaction_generator() def release_missing(self, releases, db=None, cur=None): """List releases missing from storage Args: releases: an iterable of release ids Returns: a list of missing release ids """ if not releases: return for obj in db.release_missing_from_list(releases, cur): yield obj[0] @db_transaction_generator(statement_timeout=500) def release_get(self, releases, db=None, cur=None): """Given a list of sha1, return the releases's information Args: releases: list of sha1s Yields: dicts with the same keys as those given to `release_add` (or ``None`` if a release does not exist) """ for release in db.release_get_from_list(releases, cur): data = converters.db_to_release( dict(zip(db.release_get_cols, release)) ) yield data if data['target_type'] else None @db_transaction() def snapshot_add(self, origin, visit, snapshot, db=None, cur=None): """Add a snapshot for the given origin/visit couple Args: origin (int): id of the origin visit (int): id of the visit snapshot (dict): the snapshot to add to the visit, containing the following keys: - **id** (:class:`bytes`): id of the snapshot - **branches** (:class:`dict`): branches the snapshot contains, mapping the branch name (:class:`bytes`) to the branch target, itself a :class:`dict` (or ``None`` if the branch points to an unknown object) - **target_type** (:class:`str`): one of ``content``, ``directory``, ``revision``, ``release``, ``snapshot``, ``alias`` - **target** (:class:`bytes`): identifier of the target (currently a ``sha1_git`` for all object kinds, or the name of the target branch for aliases) Raises: ValueError: if the origin or visit id does not exist. """ if not db.snapshot_exists(snapshot['id'], cur): db.mktemp_snapshot_branch(cur) db.copy_to( ( { 'name': name, 'target': info['target'] if info else None, 'target_type': info['target_type'] if info else None, } for name, info in snapshot['branches'].items() ), 'tmp_snapshot_branch', ['name', 'target', 'target_type'], cur, ) if not db.origin_visit_exists(origin, visit): raise ValueError('Not origin visit with ids (%s, %s)' % (origin, visit)) db.snapshot_add(origin, visit, snapshot['id'], cur) @db_transaction(statement_timeout=2000) def snapshot_get(self, snapshot_id, db=None, cur=None): """Get the content, possibly partial, of a snapshot with the given id The branches of the snapshot are iterated in the lexicographical order of their names. .. warning:: At most 1000 branches contained in the snapshot will be returned for performance reasons. In order to browse the whole set of branches, the method :meth:`snapshot_get_branches` should be used instead. Args: snapshot_id (bytes): identifier of the snapshot Returns: dict: a dict with three keys: * **id**: identifier of the snapshot * **branches**: a dict of branches contained in the snapshot whose keys are the branches' names. * **next_branch**: the name of the first branch not returned or :const:`None` if the snapshot has less than 1000 branches. """ return self.snapshot_get_branches(snapshot_id, db=db, cur=cur) @db_transaction(statement_timeout=2000) def snapshot_get_by_origin_visit(self, origin, visit, db=None, cur=None): """Get the content, possibly partial, of a snapshot for the given origin visit The branches of the snapshot are iterated in the lexicographical order of their names. .. warning:: At most 1000 branches contained in the snapshot will be returned for performance reasons. In order to browse the whole set of branches, the method :meth:`snapshot_get_branches` should be used instead. Args: origin (int): the origin identifier visit (int): the visit identifier Returns: dict: None if the snapshot does not exist; a dict with three keys otherwise: * **id**: identifier of the snapshot * **branches**: a dict of branches contained in the snapshot whose keys are the branches' names. * **next_branch**: the name of the first branch not returned or :const:`None` if the snapshot has less than 1000 branches. """ snapshot_id = db.snapshot_get_by_origin_visit(origin, visit, cur) if snapshot_id: return self.snapshot_get(snapshot_id, db=db, cur=cur) return None @db_transaction(statement_timeout=4000) def snapshot_get_latest(self, origin, allowed_statuses=None, db=None, cur=None): """Get the content, possibly partial, of the latest snapshot for the given origin, optionally only from visits that have one of the given allowed_statuses The branches of the snapshot are iterated in the lexicographical order of their names. .. warning:: At most 1000 branches contained in the snapshot will be returned for performance reasons. In order to browse the whole set of branches, the method :meth:`snapshot_get_branches` should be used instead. Args: origin (int): the origin identifier allowed_statuses (list of str): list of visit statuses considered to find the latest snapshot for the visit. For instance, ``allowed_statuses=['full']`` will only consider visits that have successfully run to completion. Returns: dict: a dict with three keys: * **id**: identifier of the snapshot * **branches**: a dict of branches contained in the snapshot whose keys are the branches' names. * **next_branch**: the name of the first branch not returned or :const:`None` if the snapshot has less than 1000 branches. """ origin_visit = db.origin_visit_get_latest_snapshot( origin, allowed_statuses=allowed_statuses, cur=cur) if origin_visit: origin_visit = dict(zip(db.origin_visit_get_cols, origin_visit)) return self.snapshot_get(origin_visit['snapshot'], db=db, cur=cur) @db_transaction(statement_timeout=2000) def snapshot_count_branches(self, snapshot_id, db=None, cur=None): """Count the number of branches in the snapshot with the given id Args: snapshot_id (bytes): identifier of the snapshot Returns: dict: A dict whose keys are the target types of branches and values their corresponding amount """ return dict([bc for bc in db.snapshot_count_branches(snapshot_id, cur)]) @db_transaction(statement_timeout=2000) def snapshot_get_branches(self, snapshot_id, branches_from=b'', branches_count=1000, target_types=None, db=None, cur=None): """Get the content, possibly partial, of a snapshot with the given id The branches of the snapshot are iterated in the lexicographical order of their names. Args: snapshot_id (bytes): identifier of the snapshot branches_from (bytes): optional parameter used to skip branches whose name is lesser than it before returning them branches_count (int): optional parameter used to restrain the amount of returned branches target_types (list): optional parameter used to filter the target types of branch to return (possible values that can be contained in that list are `'content', 'directory', 'revision', 'release', 'snapshot', 'alias'`) Returns: dict: None if the snapshot does not exist; a dict with three keys otherwise: * **id**: identifier of the snapshot * **branches**: a dict of branches contained in the snapshot whose keys are the branches' names. * **next_branch**: the name of the first branch not returned or :const:`None` if the snapshot has less than `branches_count` branches after `branches_from` included. """ if snapshot_id == EMPTY_SNAPSHOT_ID: return { 'id': snapshot_id, 'branches': {}, 'next_branch': None, } branches = {} next_branch = None fetched_branches = list(db.snapshot_get_by_id( snapshot_id, branches_from=branches_from, branches_count=branches_count+1, target_types=target_types, cur=cur, )) for branch in fetched_branches[:branches_count]: branch = dict(zip(db.snapshot_get_cols, branch)) del branch['snapshot_id'] name = branch.pop('name') if branch == {'target': None, 'target_type': None}: branch = None branches[name] = branch if len(fetched_branches) > branches_count: branch = dict(zip(db.snapshot_get_cols, fetched_branches[-1])) next_branch = branch['name'] if branches: return { 'id': snapshot_id, 'branches': branches, 'next_branch': next_branch, } return None @db_transaction() def origin_visit_add(self, origin, date=None, db=None, cur=None, *, ts=None): """Add an origin_visit for the origin at ts with status 'ongoing'. Args: origin: Visited Origin id date: timestamp of such visit Returns: dict: dictionary with keys origin and visit where: - origin: origin identifier - visit: the visit identifier for the new visit occurrence """ if ts is None: if date is None: raise TypeError('origin_visit_add expected 2 arguments.') else: assert date is None warnings.warn("argument 'ts' of origin_visit_add was renamed " "to 'date' in v0.0.109.", DeprecationWarning) date = ts if isinstance(date, str): date = dateutil.parser.parse(date) return { 'origin': origin, 'visit': db.origin_visit_add(origin, date, cur) } @db_transaction() def origin_visit_update(self, origin, visit_id, status, metadata=None, db=None, cur=None): """Update an origin_visit's status. Args: origin: Visited Origin id visit_id: Visit's id status: Visit's new status metadata: Data associated to the visit Returns: None """ return db.origin_visit_update(origin, visit_id, status, metadata, cur) @db_transaction_generator(statement_timeout=500) def origin_visit_get(self, origin, last_visit=None, limit=None, db=None, cur=None): """Retrieve all the origin's visit's information. Args: origin (int): The occurrence's origin (identifier). last_visit: Starting point from which listing the next visits Default to None limit (int): Number of results to return from the last visit. Default to None Yields: List of visits. """ for line in db.origin_visit_get_all( origin, last_visit=last_visit, limit=limit, cur=cur): data = dict(zip(db.origin_visit_get_cols, line)) yield data @db_transaction(statement_timeout=500) def origin_visit_get_by(self, origin, visit, db=None, cur=None): """Retrieve origin visit's information. Args: origin: The occurrence's origin (identifier). Returns: The information on that particular (origin, visit) or None if it does not exist """ ori_visit = db.origin_visit_get(origin, visit, cur) if not ori_visit: return None return dict(zip(db.origin_visit_get_cols, ori_visit)) @db_transaction(statement_timeout=2000) def object_find_by_sha1_git(self, ids, db=None, cur=None): """Return the objects found with the given ids. Args: ids: a generator of sha1_gits Returns: dict: a mapping from id to the list of objects found. Each object found is itself a dict with keys: - sha1_git: the input id - type: the type of object found - id: the id of the object found - object_id: the numeric id of the object found. """ ret = {id: [] for id in ids} for retval in db.object_find_by_sha1_git(ids, cur=cur): if retval[1]: ret[retval[0]].append(dict(zip(db.object_find_by_sha1_git_cols, retval))) return ret origin_keys = ['id', 'type', 'url'] @db_transaction(statement_timeout=500) def origin_get(self, origins, db=None, cur=None): """Return origins, either all identified by their ids or all identified by tuples (type, url). Args: origin: a list of dictionaries representing the individual origins to find. These dicts have either the keys type and url: - type (FIXME: enum TBD): the origin type ('git', 'wget', ...) - url (bytes): the url the origin points to or the id: - id: the origin id Returns: dict: the origin dictionary with the keys: - id: origin's id - type: origin's type - url: origin's url Raises: ValueError: if the keys does not match (url and type) nor id. """ if isinstance(origins, dict): # Old API return_single = True origins = [origins] elif len(origins) == 0: return [] else: return_single = False origin_ids = [origin.get('id') for origin in origins] origin_types_and_urls = [(origin.get('type'), origin.get('url')) for origin in origins] if any(origin_ids): # Lookup per ID if all(origin_ids): results = db.origin_get(origin_ids, cur) else: raise ValueError( 'Either all origins or none at all should have an "id".') elif any(type_ and url for (type_, url) in origin_types_and_urls): # Lookup per type + URL if all(type_ and url for (type_, url) in origin_types_and_urls): results = db.origin_get_with(origin_types_and_urls, cur) else: raise ValueError( 'Either all origins or none at all should have a ' '"type" and an "url".') else: # unsupported lookup raise ValueError('Origin must have either id or (type and url).') results = [dict(zip(self.origin_keys, result)) for result in results] if return_single: assert len(results) == 1 if results[0]['id'] is not None: return results[0] else: return None else: return [None if res['id'] is None else res for res in results] @db_transaction_generator() def origin_get_range(self, origin_from=1, origin_count=100, db=None, cur=None): """Retrieve ``origin_count`` origins whose ids are greater or equal than ``origin_from``. Origins are sorted by id before retrieving them. Args: origin_from (int): the minimum id of origins to retrieve origin_count (int): the maximum number of origins to retrieve Yields: dicts containing origin information as returned by :meth:`swh.storage.storage.Storage.origin_get`. """ for origin in db.origin_get_range(origin_from, origin_count, cur): yield dict(zip(self.origin_keys, origin)) @db_transaction_generator() def origin_search(self, url_pattern, offset=0, limit=50, regexp=False, with_visit=False, db=None, cur=None): """Search for origins whose urls contain a provided string pattern or match a provided regular expression. The search is performed in a case insensitive way. Args: url_pattern (str): the string pattern to search for in origin urls offset (int): number of found origins to skip before returning results limit (int): the maximum number of found origins to return regexp (bool): if True, consider the provided pattern as a regular expression and return origins whose urls match it with_visit (bool): if True, filter out origins with no visit Yields: dicts containing origin information as returned by :meth:`swh.storage.storage.Storage.origin_get`. """ for origin in db.origin_search(url_pattern, offset, limit, regexp, with_visit, cur): yield dict(zip(self.origin_keys, origin)) @db_transaction() def origin_count(self, url_pattern, regexp=False, with_visit=False, db=None, cur=None): """Count origins whose urls contain a provided string pattern or match a provided regular expression. The pattern search in origin urls is performed in a case insensitive way. Args: url_pattern (str): the string pattern to search for in origin urls regexp (bool): if True, consider the provided pattern as a regular expression and return origins whose urls match it with_visit (bool): if True, filter out origins with no visit Returns: int: The number of origins matching the search criterion. """ return db.origin_count(url_pattern, regexp, with_visit, cur) @db_transaction_generator(statement_timeout=500) def person_get(self, person, db=None, cur=None): """Return the persons identified by their ids. Args: person: array of ids. Returns: The array of persons corresponding of the ids. """ for person in db.person_get(person): yield dict(zip(db.person_get_cols, person)) @db_transaction() def origin_add(self, origins, db=None, cur=None): """Add origins to the storage Args: origins: list of dictionaries representing the individual origins, with the following keys: - type: the origin type ('git', 'svn', 'deb', ...) - url (bytes): the url the origin points to Returns: list: given origins as dict updated with their id """ for origin in origins: origin['id'] = self.origin_add_one(origin, db=db, cur=cur) return origins @db_transaction() def origin_add_one(self, origin, db=None, cur=None): """Add origin to the storage Args: origin: dictionary representing the individual origin to add. This dict has the following keys: - type (FIXME: enum TBD): the origin type ('git', 'wget', ...) - url (bytes): the url the origin points to Returns: the id of the added origin, or of the identical one that already exists. """ origin_id = list(db.origin_get_with( [(origin['type'], origin['url'])], cur))[0][0] if origin_id: return origin_id return db.origin_add(origin['type'], origin['url'], cur) @db_transaction() def fetch_history_start(self, origin_id, db=None, cur=None): """Add an entry for origin origin_id in fetch_history. Returns the id of the added fetch_history entry """ fetch_history = { 'origin': origin_id, 'date': datetime.datetime.now(tz=datetime.timezone.utc), } return db.create_fetch_history(fetch_history, cur) @db_transaction() def fetch_history_end(self, fetch_history_id, data, db=None, cur=None): """Close the fetch_history entry with id `fetch_history_id`, replacing its data with `data`. """ now = datetime.datetime.now(tz=datetime.timezone.utc) fetch_history = db.get_fetch_history(fetch_history_id, cur) if not fetch_history: raise ValueError('No fetch_history with id %d' % fetch_history_id) fetch_history['duration'] = now - fetch_history['date'] fetch_history.update(data) db.update_fetch_history(fetch_history, cur) @db_transaction() def fetch_history_get(self, fetch_history_id, db=None, cur=None): """Get the fetch_history entry with id `fetch_history_id`. """ return db.get_fetch_history(fetch_history_id, cur) @db_transaction(statement_timeout=500) def stat_counters(self, db=None, cur=None): """compute statistics about the number of tuples in various tables Returns: dict: a dictionary mapping textual labels (e.g., content) to integer values (e.g., the number of tuples in table content) """ return {k: v for (k, v) in db.stat_counters()} @db_transaction() def refresh_stat_counters(self, db=None, cur=None): """Recomputes the statistics for `stat_counters`.""" keys = [ 'content', 'directory', 'directory_entry_dir', 'directory_entry_file', 'directory_entry_rev', 'origin', 'origin_visit', 'person', 'release', 'revision', 'revision_history', 'skipped_content', 'snapshot'] for key in keys: cur.execute('select * from swh_update_counter(%s)', (key,)) @db_transaction() def origin_metadata_add(self, origin_id, ts, provider, tool, metadata, db=None, cur=None): """ Add an origin_metadata for the origin at ts with provenance and metadata. Args: origin_id (int): the origin's id for which the metadata is added ts (datetime): timestamp of the found metadata provider (int): the provider of metadata (ex:'hal') tool (int): tool used to extract metadata metadata (jsonb): the metadata retrieved at the time and location Returns: id (int): the origin_metadata unique id """ if isinstance(ts, str): ts = dateutil.parser.parse(ts) return db.origin_metadata_add(origin_id, ts, provider, tool, metadata, cur) @db_transaction_generator(statement_timeout=500) def origin_metadata_get_by(self, origin_id, provider_type=None, db=None, cur=None): """Retrieve list of all origin_metadata entries for the origin_id Args: origin_id (int): the unique origin identifier provider_type (str): (optional) type of provider Returns: list of dicts: the origin_metadata dictionary with the keys: - origin_id (int): origin's id - discovery_date (datetime): timestamp of discovery - tool_id (int): metadata's extracting tool - metadata (jsonb) - provider_id (int): metadata's provider - provider_name (str) - provider_type (str) - provider_url (str) """ for line in db.origin_metadata_get_by(origin_id, provider_type, cur): yield dict(zip(db.origin_metadata_get_cols, line)) @db_transaction_generator() def tool_add(self, tools, db=None, cur=None): """Add new tools to the storage. Args: tools (iterable of :class:`dict`): Tool information to add to storage. Each tool is a :class:`dict` with the following keys: - name (:class:`str`): name of the tool - version (:class:`str`): version of the tool - configuration (:class:`dict`): configuration of the tool, must be json-encodable Yields: :class:`dict`: All the tools inserted in storage (including the internal ``id``). The order of the list is not guaranteed to match the order of the initial list. """ db.mktemp_tool(cur) db.copy_to(tools, 'tmp_tool', ['name', 'version', 'configuration'], cur) tools = db.tool_add_from_temp(cur) for line in tools: yield dict(zip(db.tool_cols, line)) @db_transaction(statement_timeout=500) def tool_get(self, tool, db=None, cur=None): """Retrieve tool information. Args: tool (dict): Tool information we want to retrieve from storage. The dicts have the same keys as those used in :func:`tool_add`. Returns: dict: The full tool information if it exists (``id`` included), None otherwise. """ tool_conf = tool['configuration'] if isinstance(tool_conf, dict): tool_conf = json.dumps(tool_conf) idx = db.tool_get(tool['name'], tool['version'], tool_conf) if not idx: return None return dict(zip(db.tool_cols, idx)) @db_transaction() def metadata_provider_add(self, provider_name, provider_type, provider_url, metadata, db=None, cur=None): """Add a metadata provider. Args: provider_name (str): Its name provider_type (str): Its type (eg. `'deposit-client'`) provider_url (str): Its URL metadata: JSON-encodable object Returns: int: an identifier of the provider """ return db.metadata_provider_add(provider_name, provider_type, provider_url, metadata, cur) @db_transaction() def metadata_provider_get(self, provider_id, db=None, cur=None): """Get a metadata provider Args: provider_id: Its identifier, as given by `metadata_provider_add`. Returns: dict: same as `metadata_provider_add`; or None if it does not exist. """ result = db.metadata_provider_get(provider_id) if not result: return None return dict(zip(db.metadata_provider_cols, result)) @db_transaction() def metadata_provider_get_by(self, provider, db=None, cur=None): """Get a metadata provider Args: provider (dict): A dictionary with keys: * provider_name: Its name * provider_url: Its URL Returns: dict: same as `metadata_provider_add`; or None if it does not exist. """ result = db.metadata_provider_get_by(provider['provider_name'], provider['provider_url']) if not result: return None return dict(zip(db.metadata_provider_cols, result)) def diff_directories(self, from_dir, to_dir, track_renaming=False): """Compute the list of file changes introduced between two arbitrary directories (insertion / deletion / modification / renaming of files). Args: from_dir (bytes): identifier of the directory to compare from to_dir (bytes): identifier of the directory to compare to track_renaming (bool): whether or not to track files renaming Returns: A list of dict describing the introduced file changes (see :func:`swh.storage.algos.diff.diff_directories` for more details). """ return diff.diff_directories(self, from_dir, to_dir, track_renaming) def diff_revisions(self, from_rev, to_rev, track_renaming=False): """Compute the list of file changes introduced between two arbitrary revisions (insertion / deletion / modification / renaming of files). Args: from_rev (bytes): identifier of the revision to compare from to_rev (bytes): identifier of the revision to compare to track_renaming (bool): whether or not to track files renaming Returns: A list of dict describing the introduced file changes (see :func:`swh.storage.algos.diff.diff_directories` for more details). """ return diff.diff_revisions(self, from_rev, to_rev, track_renaming) def diff_revision(self, revision, track_renaming=False): """Compute the list of file changes introduced by a specific revision (insertion / deletion / modification / renaming of files) by comparing it against its first parent. Args: revision (bytes): identifier of the revision from which to compute the list of files changes track_renaming (bool): whether or not to track files renaming Returns: A list of dict describing the introduced file changes (see :func:`swh.storage.algos.diff.diff_directories` for more details). """ return diff.diff_revision(self, revision, track_renaming)