diff --git a/swh/indexer/tests/test_ctags.py b/swh/indexer/tests/test_ctags.py
--- a/swh/indexer/tests/test_ctags.py
+++ b/swh/indexer/tests/test_ctags.py
@@ -3,9 +3,12 @@
 # License: GNU General Public License version 3, or any later version
 # See top-level LICENSE file for more information
 
+import json
 import unittest
-
 from unittest.mock import patch
+
+import pytest
+
 from swh.indexer.ctags import (
     CtagsIndexer, run_ctags
 )
@@ -13,7 +16,8 @@
 from swh.indexer.tests.test_utils import (
     CommonContentIndexerTest,
     CommonIndexerWithErrorsTest, CommonIndexerNoTool,
-    SHA1_TO_CTAGS, NoDiskIndexer, BASE_TEST_CONFIG
+    SHA1_TO_CTAGS, NoDiskIndexer, BASE_TEST_CONFIG,
+    OBJ_STORAGE_DATA, fill_storage, fill_obj_storage
 )
 
 
@@ -114,31 +118,72 @@
     def setUp(self):
         self.indexer = CtagsIndexerTest()
         self.idx_storage = self.indexer.idx_storage
+        fill_storage(self.indexer.storage)
+        fill_obj_storage(self.indexer.objstorage)
 
         # Prepare test input
         self.id0 = '01c9379dfc33803963d07c1ccc748d3fe4c96bb5'
         self.id1 = 'd4c647f0fc257591cc9ba1722484229780d1c607'
         self.id2 = '688a5ef812c53907562fe379d4b3851e69c7cb15'
 
-        tool_id = self.indexer.tool['id']
+        tool = {k.replace('tool_', ''): v
+                for (k, v) in self.indexer.tool.items()}
+
         self.expected_results = {
             self.id0: {
                 'id': self.id0,
-                'indexer_configuration_id': tool_id,
-                'ctags': SHA1_TO_CTAGS[self.id0],
+                'tool': tool,
+                **SHA1_TO_CTAGS[self.id0][0],
             },
             self.id1: {
                 'id': self.id1,
-                'indexer_configuration_id': tool_id,
-                'ctags': SHA1_TO_CTAGS[self.id1],
+                'tool': tool,
+                **SHA1_TO_CTAGS[self.id1][0],
             },
             self.id2: {
                 'id': self.id2,
-                'indexer_configuration_id': tool_id,
-                'ctags': SHA1_TO_CTAGS[self.id2],
+                'tool': tool,
+                **SHA1_TO_CTAGS[self.id2][0],
             }
         }
 
+    def _set_mocks(self, mock_subprocess, mock_compute_language):
+        def find_ctags_for_content(raw_content):
+            for (sha1, ctags) in SHA1_TO_CTAGS.items():
+                if OBJ_STORAGE_DATA[sha1] == raw_content:
+                    return ctags
+            else:
+                raise ValueError(('%r not found in objstorage, can\'t mock '
+                                  'its ctags.') % raw_content)
+
+        def fake_language(raw_content, *args, **kwargs):
+            ctags = find_ctags_for_content(raw_content)
+            return {'lang': ctags[0]['lang']}
+        mock_compute_language.side_effect = fake_language
+
+        def fake_subprocess(cmd, *args, **kwargs):
+            print(cmd)
+            id_ = cmd[-1]  # when using NoDiskIndexer, path is replaced by id
+            return '\n'.join(
+                json.dumps({'language': ctag['lang'], **ctag})
+                for ctag in SHA1_TO_CTAGS[id_])
+        mock_subprocess.check_output.side_effect = fake_subprocess
+
+    @pytest.mark.fs
+    @patch('swh.indexer.ctags.compute_language')
+    @patch('swh.indexer.ctags.subprocess')
+    def test_index(self, mock_subprocess, mock_compute_language):
+        self._set_mocks(mock_subprocess, mock_compute_language)
+        super().test_index()
+
+    @pytest.mark.fs
+    @patch('swh.indexer.ctags.compute_language')
+    @patch('swh.indexer.ctags.subprocess')
+    def test_index_one_unknown_sha1(
+            self, mock_subprocess, mock_compute_language):
+        self._set_mocks(mock_subprocess, mock_compute_language)
+        super().test_index()
+
 
 class CtagsIndexerUnknownToolTestStorage(
         CommonIndexerNoTool, CtagsIndexerTest):