diff --git a/swh/clearlydefined/mapping_utils.py b/swh/clearlydefined/mapping_utils.py --- a/swh/clearlydefined/mapping_utils.py +++ b/swh/clearlydefined/mapping_utils.py @@ -3,10 +3,17 @@ # License: GNU Affero General Public License version 3, or any later version # See top-level LICENSE file for more information +import json +from typing import Any +from typing import Dict from typing import Optional +from typing import Tuple +import gzip from swh.model.hashutil import hash_to_bytes from swh.model.hashutil import hash_to_hex +from swh.model.model import MetadataTargetType +from swh.model.model import Origin import psycopg2 @@ -27,3 +34,158 @@ sha1_git = hash_to_hex(sha1_git_tuple_data[0][0]) swh_id = "swh:1:cnt:{sha1_git}".format(sha1_git=sha1_git) return swh_id + + +def sha1_git_in_revisions(sha1_git: str, dsn: str) -> bool: + """ + Take sha1_git and dsn as input and + tell whether that sha1_git exists in revision + table + """ + read_connection = psycopg2.connect(dsn=dsn) + cur = read_connection.cursor() + sha1_git = hash_to_bytes(sha1_git) + cur.execute("SELECT id FROM revision WHERE id= %s;", (sha1_git,)) + rows = cur.fetchall() + if len(rows) == 1: + return True + else: + return False + + +def map_scancode(metadata_string: str, dsn: str) -> Tuple[bool, list]: + metadata = json.loads(metadata_string) + content = metadata.get("content") or {} + files = content.get("files") or {} + flag = True + data = [] + for file in files: + sha1 = file.get("sha1") + if sha1: + swh_id = map_sha1_with_swhid(sha1, dsn) + if swh_id: + data.append((swh_id, MetadataTargetType.CONTENT, None)) + else: + flag = False + return flag, data + + +def map_licensee(metadata_string: str, dsn: str) -> Tuple[bool, list]: + metadata = json.loads(metadata_string) + licensee = metadata.get("licensee") or {} + output = licensee.get("output") or {} + content = output.get("content") or {} + files = content.get("matched_files") or [] + flag = True + data = [] + for file in files: + sha1 = file.get("content_hash") + if sha1: + swh_id = map_sha1_with_swhid(sha1, dsn) + if swh_id: + data.append((swh_id, MetadataTargetType.CONTENT, None)) + else: + flag = False + return flag, data + + +def map_clearlydefined(metadata_string: str, dsn: str) -> Tuple[bool, list]: + metadata = json.loads(metadata_string) + files = metadata.get("files") or [] + flag = True + data = [] + for file in files: + hashes = file.get("hashes") or {} + sha1 = hashes.get("sha1") + if sha1: + swh_id = map_sha1_with_swhid(sha1, dsn) + if swh_id: + data.append((swh_id, MetadataTargetType.CONTENT, None)) + else: + flag = False + return flag, data + + +def map_harvest(tool: str, metadata_string: str, dsn: str) -> Tuple[bool, list]: + tools = { + "scancode": map_scancode, + "licensee": map_licensee, + "clearlydefined": map_clearlydefined, + } + + if tool in tools: + return tools[tool](metadata_string, dsn) + + return False, [] + + +def map_definition(metadata_string: str, dsn: str) -> Optional[Tuple[bool, list]]: + metadata: Dict[str, Dict[str, Optional[Dict]]] = json.loads(metadata_string) + described: Dict[str, Optional[Dict[str, Any]]] = metadata.get("described") or {} + hashes: Dict[str, str] = described.get("hashes") or {} + sha1_git = hashes.get("gitSha") + source: Dict[str, str] = described.get("sourceLocation") or {} + url = source.get("url") + origin = None + if isinstance(url, str): + origin = Origin(url=url) + + if sha1_git and isinstance(sha1_git, str): + if not sha1_git_in_revisions(sha1_git=sha1_git, dsn=dsn): + return None + swh_id: Optional[str] = "swh:1:rev:{sha1_git}".format(sha1_git=sha1_git) + metadata_type = MetadataTargetType.REVISION + return True, [(swh_id, metadata_type, origin)] + + sha1 = hashes.get("sha1") + if isinstance(sha1, str): + swh_id = map_sha1_with_swhid(sha1=sha1, dsn=dsn) + if not swh_id: + return None + metadata_type = MetadataTargetType.CONTENT + return True, [(swh_id, metadata_type, origin)] + + return None + + +def check_for_valid_ID(list_cd_path: list) -> bool: + if len(list_cd_path) != 6: + if len(list_cd_path) != 9: + return False + if list_cd_path[4] != "revision": + return False + if not list_cd_path[-1].endswith(".json"): + return False + return True + + +def map_row(row: tuple, swh_dsn: str) -> Optional[Tuple[bool, list]]: + cd_path = row[0] + list_cd_path = cd_path.split("/") + + if not check_for_valid_ID(list_cd_path): + return None + + metadata_string = gzip.decompress(row[1]).decode() + # if the row doesn't contain any information in metadata return None + if metadata_string == "": + return None + + # if the ID of row contains 9 components: + # ////revision//tool//.json + # then it is a harvest + if len(list_cd_path) == 9: + if list_cd_path[6] != "tool": + return None + tool = list_cd_path[7] + if tool not in ("scancode", "licensee", "clearlydefined"): + return None + return map_harvest(tool=tool, metadata_string=metadata_string, dsn=swh_dsn) + + # if the ID of row contains 6 components: + # ////revision/.json + # then it is a defintion + return map_definition( + metadata_string=metadata_string, + dsn=swh_dsn, + ) diff --git a/swh/clearlydefined/tests/data/clearlydefined.json b/swh/clearlydefined/tests/data/clearlydefined.json new file mode 100644 --- /dev/null +++ b/swh/clearlydefined/tests/data/clearlydefined.json @@ -0,0 +1,282 @@ +{ + "_metadata": { + "type": "npm", + "url": "cd:/npm/npmjs/@pixi/mesh-extras/5.3.5", + "fetchedAt": "2020-12-18T10:26:42.827Z", + "links": { + "self": { + "href": "urn:npm:npmjs:@pixi:mesh-extras:revision:5.3.5:tool:clearlydefined:1.3.4", + "type": "resource" + }, + "siblings": { + "href": "urn:npm:npmjs:@pixi:mesh-extras:revision:5.3.5:tool:clearlydefined", + "type": "collection" + }, + "licensee": { + "href": "urn:npm:npmjs:@pixi:mesh-extras:revision:5.3.5:tool:licensee", + "type": "collection" + }, + "scancode": { + "href": "urn:npm:npmjs:@pixi:mesh-extras:revision:5.3.5:tool:scancode", + "type": "collection" + }, + 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"http://opensource.org/licenses/mit-license.php", + "reference_url": "https://enterprise.dejacode.com/urn/urn:dje:license:mit", + "spdx_license_key": "MIT", + "spdx_url": "https://spdx.org/licenses/MIT", + "start_line": 8, + "end_line": 9, + "matched_rule": { + "identifier": "mit_129.RULE", + "license_expression": "mit", + "licenses": [ + "mit" + ], + "is_license_text": false, + "is_license_notice": true, + "is_license_reference": false, + "is_license_tag": false, + "matcher": "2-aho", + "rule_length": 25, + "matched_length": 25, + "match_coverage": 100, + "rule_relevance": 100 + }, + "matched_text": "Use of this source code is governed by an MIT-style license that can be\n * found in the LICENSE file at https://angular.io/license" + } + ], + "license_expressions": [ + "mit" + ], + "holders": [ + { + "value": "Google Inc.", + "start_line": 6, + "end_line": 6 + } + ], + "copyrights": [ + { + "value": "Copyright Google Inc.", + "start_line": 6, + "end_line": 6 + } + ], + "authors": [], + "packages": [], + "emails": [], + "urls": [ + { + "url": "https://angular.io/license", + "start_line": 9, + "end_line": 9 + } + ], + "is_legal": false, + "is_manifest": false, + "is_readme": false, + "is_top_level": false, + "is_key_file": false, + "is_generated": false, + "is_license_text": false, + "files_count": 0, + "dirs_count": 0, + "size_count": 0, + "scan_errors": [] + } + ] + } +} \ No newline at end of file diff --git a/swh/clearlydefined/tests/test_mapping.py b/swh/clearlydefined/tests/test_mapping.py --- a/swh/clearlydefined/tests/test_mapping.py +++ b/swh/clearlydefined/tests/test_mapping.py @@ -4,10 +4,27 @@ # See top-level LICENSE file for more information from swh.clearlydefined.mapping_utils import map_sha1_with_swhid +from swh.clearlydefined.mapping_utils import map_row +from swh.clearlydefined.mapping_utils import map_harvest +from swh.clearlydefined.mapping_utils import map_definition + import psycopg2 +import gzip +from swh.model.model import MetadataTargetType +from swh.model.model import Origin +import json + + +path = "swh/clearlydefined/tests/data/" + + +def file_data(file_name): + with open(file_name) as file: + data = file.read() + return data -def add_data(dsn: str): +def add_content_data(dsn: str): write_connection = psycopg2.connect(dsn=dsn) cur = write_connection.cursor() data = [ @@ -49,9 +66,105 @@ write_connection.commit() -def test_mapping(swh_storage_backend_config): +def add_person_data(dsn: str): + write_connection = psycopg2.connect(dsn=dsn) + cur = write_connection.cursor() + data = [ + { + "id": "21902125", + "name": "test", + "email": "test@test.com", + "fullname": "test", + } + ] + for row in data: + cur.execute( + "INSERT INTO person (id, name, email, fullname) VALUES \ + (%s,%s,%s,%s);", + ( + row["id"], + row["name"], + row["email"], + row["fullname"], + ), + ) + write_connection.commit() + + +def add_revision_data(dsn: str): + write_connection = psycopg2.connect(dsn=dsn) + cur = write_connection.cursor() + add_person_data(dsn) + data = [ + { + "id": "\\x4c66129b968ab8122964823d1d77677f50884cf6", + "date": "2019-08-20 17:46:13+00", + "date_offset": -240, + "committer_date": "2019-08-20 17:46:13+00", + "committer_date_offset": -240, + "type": "git", + "directory": "\\x7cc244fd877dd5627aa5d4788f835039278083c0", + "message": "\\x4d65726761", + "author": 21902125, + "committer": 21902125, + "synthetic": False, + "metadata": json.dumps({}), + "object_id": 1813458854, + "date_neg_utc_offset": False, + "committer_date_neg_utc_offset": False, + "extra_headers": [], + }, + { + "id": "\\x3c66129b968ab8122964823d1d77677f50884cf6", + "date": "2019-08-20 17:46:13+00", + "date_offset": -240, + "committer_date": "2019-08-20 17:46:13+00", + "committer_date_offset": -240, + "type": "git", + "directory": "\\x7cc244fd877dd5627aa5d4788f835039278083c0", + "message": "\\x4d65726761", + "author": 21902125, + "committer": 21902125, + "synthetic": False, + "metadata": json.dumps({}), + "object_id": 1813458855, + "date_neg_utc_offset": False, + "committer_date_neg_utc_offset": False, + "extra_headers": [], + }, + ] + for row in data: + cur.execute( + "INSERT INTO revision (id,date,date_offset,committer_date, \ + committer_date_offset,type,directory,message,author,committer,synthetic,\ + metadata,object_id,date_neg_utc_offset,committer_date_neg_utc_offset,\ + extra_headers) VALUES \ + (%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s,%s);", + ( + row["id"], + row["date"], + row["date_offset"], + row["committer_date"], + row["committer_date_offset"], + row["type"], + row["directory"], + row["message"], + row["author"], + row["committer"], + row["synthetic"], + row["metadata"], + row["object_id"], + row["date_neg_utc_offset"], + row["committer_date_neg_utc_offset"], + row["extra_headers"], + ), + ) + write_connection.commit() + + +def test_mapping_sha1_with_swhID(swh_storage_backend_config): dsn = swh_storage_backend_config["db"] - add_data(dsn=dsn) + add_content_data(dsn=dsn) sha1 = "a6628c8a4fbc08c29b8472e2222975e5b9918131" assert "swh:1:cnt:e103b11cbfecbc116dacbb1f9ab2a02176092a32" == map_sha1_with_swhid( sha1=sha1, dsn=dsn @@ -60,13 +173,185 @@ def test_mapping_with_empty_sha1(swh_storage_backend_config): dsn = swh_storage_backend_config["db"] - add_data(dsn=dsn) + add_content_data(dsn=dsn) sha1 = "" assert map_sha1_with_swhid(sha1=sha1, dsn=dsn) is None def test_mapping_with_wrong_sha1(swh_storage_backend_config): dsn = swh_storage_backend_config["db"] - add_data(dsn=dsn) + add_content_data(dsn=dsn) sha1 = "6ac599151a7aaa8ca5d38dc5bb61b49193a3cadc1ed33de5a57e4d1ecc53c846" assert map_sha1_with_swhid(sha1=sha1, dsn=dsn) is None + + +def test_map_row_for_definitions_with_sha1(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + row = [] + add_content_data(dsn) + row.append("maven/mavencentral/za.co.absa.cobrix/cobol-parser/revision/0.4.0.json") + row.append(gzip.compress(file_data(f"{path}definitions.json").encode())) + row = tuple(row) + assert ( + True, + [ + ( + "swh:1:cnt:e103b11cbfecbc116dacbb1f9ab2a02176092a32", + MetadataTargetType.CONTENT, + Origin( + url="http://central.maven.org/maven2/za/co/absa/cobrix/" + "cobol-parser/0.4.0/cobol-parser-0.4.0-sources.jar" + ), + ) + ], + ) == map_row(row, dsn) + + +def test_map_row_for_definitions_with_gitsha1(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + row = [] + add_revision_data(dsn) + row.append("maven/mavencentral/za.co.absa.cobrix/cobol-parser/revision/0.4.0.json") + row.append(gzip.compress(file_data(f"{path}definitions_sha1git.json").encode())) + row = tuple(row) + assert ( + True, + [ + ( + "swh:1:rev:4c66129b968ab8122964823d1d77677f50884cf6", + MetadataTargetType.REVISION, + Origin( + url="http://central.maven.org/maven2/za/co/absa/cobrix/" + "cobol-parser/0.4.0/cobol-parser-0.4.0-sources.jar" + ), + ) + ], + ) == map_row(row, dsn) + + +def test_map_row_for_scancode(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + row = [] + add_content_data(dsn) + row.append("npm/npmjs/@ngtools/webpack/revision/10.2.1/tool/scancode/3.2.2.json") + row.append(gzip.compress(file_data(f"{path}scancode.json").encode())) + row = tuple(row) + assert ( + False, + [ + ( + "swh:1:cnt:e103b11cbfecbc116dacbb1f9ab2a02176092a32", + MetadataTargetType.CONTENT, + None, + ) + ], + ) == map_row(row, dsn) + + +def test_map_row_for_licensee(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + row = [] + add_content_data(dsn) + row.append( + "npm/npmjs/@fluidframework/replay-driver/revision/0.31.0/tool/licensee/\ + 9.13.0.json" + ) + row.append(gzip.compress(file_data(f"{path}licensee.json").encode())) + row = tuple(row) + assert ( + False, + [ + ( + "swh:1:cnt:095b80e14c3ea6254f57e94761f2313e32b1d58a", + MetadataTargetType.CONTENT, + None, + ) + ], + ) == map_row(row, dsn) + + +def test_map_row_for_clearlydefined(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + row = [] + add_content_data(dsn) + row.append( + "npm/npmjs/@pixi/mesh-extras/revision/5.3.5/tool/clearlydefined/1.3.4.json" + ) + row.append(gzip.compress(file_data(f"{path}clearlydefined.json").encode())) + row = tuple(row) + assert ( + False, + [ + ( + "swh:1:cnt:095b80e14c3ea6254f57e94761f2313e32b1d58a", + MetadataTargetType.CONTENT, + None, + ) + ], + ) == map_row(row, dsn) + + +def test_sha1git_not_in_revision(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + add_revision_data(dsn=dsn) + assert map_definition( + metadata_string=file_data(f"{path}definitions_not_mapped_sha1_git.json"), + dsn=dsn, + ) is None + + +def test_sha1_not_in_content(swh_storage_backend_config): + dsn = swh_storage_backend_config["db"] + add_content_data(dsn=dsn) + assert map_definition( + metadata_string=file_data(f"{path}definitions_not_mapped.json"), + dsn=dsn, + ) is None + + +def test_map_harvest_with_wrong_tool(): + assert (False, []) == map_harvest(tool="abc", metadata_string="", dsn="") + + +def test_map_definition_with_wrong_metadata(): + assert map_definition( + metadata_string=file_data(f"{path}licensee.json"), dsn="" + ) is None + + +def test_map_row_with_invalid_ID(): + row = ("maven/mavencentral/cobol-parser/revision/0.4.0.json") + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_empty_metadata_string(): + row = [] + row.append("maven/mavencentral/za.co.absa.cobrix/cobol-parser/revision/0.4.0.json") + row.append(gzip.compress("".encode())) + row = tuple(row) + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_invalid_ID_without_revision(): + row = ("maven/mavencentral/za.co.absa.cobrix/cobol-parser/abc/0.4.0.json") + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_invalid_ID_without_json_extension(): + row = ("maven/mavencentral/za.co.absa.cobrix/cobol-parser/revision/0.4.0.txt") + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_invalid_ID_without_6_or_9_length(): + row = ("npm/npmjs/@ngtools/webpack/revision/10.2.1/tool/3.2.2.json") + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_invalid_tool(): + row = ("npm/npmjs/@ngtools/webpack/revision/10.2.1/tool/abc/3.2.2.json") + assert map_row(row=row,swh_dsn="") is None + + +def test_map_row_with_invalid_harvest_ID(): + row = ("npm/npmjs/@ngtools/webpack/revision/10.2.1/abc/scancode/3.2.2.json") + assert map_row(row=row,swh_dsn="") is None