diff --git a/swh/lister/github/__init__.py b/swh/lister/github/__init__.py --- a/swh/lister/github/__init__.py +++ b/swh/lister/github/__init__.py @@ -4,11 +4,10 @@ def register(): - from .models import GitHubModel from .lister import GitHubLister return { - "models": [GitHubModel], + "models": [], "lister": GitHubLister, "task_modules": ["%s.tasks" % __name__], } diff --git a/swh/lister/github/lister.py b/swh/lister/github/lister.py --- a/swh/lister/github/lister.py +++ b/swh/lister/github/lister.py @@ -1,75 +1,182 @@ -# Copyright (C) 2017-2020 The Software Heritage developers +# Copyright (C) 2020 The Software Heritage developers # See the AUTHORS file at the top-level directory of this distribution # License: GNU General Public License version 3, or any later version # See top-level LICENSE file for more information -import re +from dataclasses import dataclass, asdict +import datetime +import logging +import random +from typing import Any, Dict, Iterator, List, Optional +from urllib.parse import urlparse, parse_qs -from typing import Any, Dict, List, Tuple, Optional +import iso8601 +import requests -from swh.lister.core.indexing_lister import IndexingHttpLister -from swh.lister.github.models import GitHubModel +from swh.scheduler.model import ListedOrigin +from .. import USER_AGENT +from ..pattern import Lister -from requests import Response +logger = logging.getLogger(__name__) -class GitHubLister(IndexingHttpLister): - PATH_TEMPLATE = "/repositories?since=%d" - MODEL = GitHubModel - DEFAULT_URL = "https://api.github.com" - API_URL_INDEX_RE = re.compile(r"^.*/repositories\?since=(\d+)") +@dataclass +class GitHubListerState: + """State of the GitHub lister""" + + last_seen_id: int = 0 + """Numeric id of the last repository listed on an incremental pass""" + + +class GitHubLister(Lister[GitHubListerState, List[Dict[str, Any]]]): + """List origins from GitHub. + + By default, the lister runs in incremental mode: it lists all repositories, + starting with the `last_seen_id` stored in the lister status. + + Providing the `first_id` and `last_id` arguments enables the "relisting" + mode: in that mode, the lister finds the origins present in the range + **excluding** `first_id` and **including** `last_id`. In this mode, the + lister can overrun and record origins above the `last_id`; As the lister is + fully idempotent, this is not a practical problem. + + In relisting mode, the lister state in database is not updated. + + Args: + first_id: the id of the first repo to list + last_id: stop listing after seeing a repo with an id higher than this value. + + """ + LISTER_NAME = "github" - instance = "github" # There is only 1 instance of such lister - default_min_bound = 0 # type: Any - - def get_model_from_repo(self, repo: Dict[str, Any]) -> Dict[str, Any]: - return { - "uid": repo["id"], - "indexable": repo["id"], - "name": repo["name"], - "full_name": repo["full_name"], - "html_url": repo["html_url"], - "origin_url": repo["html_url"], - "origin_type": "git", - "fork": repo["fork"], - } - - def transport_quota_check(self, response: Response) -> Tuple[bool, int]: - x_rate_limit_remaining = response.headers.get("X-RateLimit-Remaining") - if not x_rate_limit_remaining: - return False, 0 - reqs_remaining = int(x_rate_limit_remaining) - if response.status_code == 403 and reqs_remaining == 0: - delay = int(response.headers["Retry-After"]) - return True, delay - return False, 0 - - def get_next_target_from_response(self, response: Response) -> Optional[int]: - if "next" in response.links: - next_url = response.links["next"]["url"] - return int(self.API_URL_INDEX_RE.match(next_url).group(1)) # type: ignore - return None - - def transport_response_simplified(self, response: Response) -> List[Dict[str, Any]]: - repos = response.json() - return [ - self.get_model_from_repo(repo) for repo in repos if repo and "id" in repo - ] - - def request_headers(self) -> Dict[str, Any]: - """(Override) Set requests headers to send when querying the GitHub API - """ - headers = super().request_headers() - headers["Accept"] = "application/vnd.github.v3+json" - return headers + def __init__(self, first_id: Optional[int] = None, last_id: Optional[int] = None): + super().__init__(url="https://api.github.com/", instance="github") + + self.first_id = first_id if first_id is not None else None + self.last_id = last_id if last_id is not None else None + + self.relisting = self.first_id is not None or self.last_id is not None + + self.tokens = self.get_credentials()[:] + + random.shuffle(self.tokens) + self.current_token = -1 + + self.session = requests.Session() + self.session.headers.update( + {"Accept": "application/vnd.github.v3+json", "User-Agent": USER_AGENT} + ) + self.update_token() + + def update_token(self) -> None: + """Update the current authentication token""" + if not self.tokens: + return + + self.current_token = (self.current_token + 1) % len(self.tokens) + auth = self.tokens[self.current_token] + if "password" in auth: + token = auth["password"] + else: + token = auth["token"] + + self.session.headers.update({"Authorization": f"token {token}"}) - def disable_deleted_repo_tasks(self, index: int, next_index: int, keep_these: int): - """ (Overrides) Fix provided index value to avoid erroneously disabling - some scheduler tasks + def state_from_dict(self, d: Dict[str, Any]) -> GitHubListerState: + return GitHubListerState(**d) + + def state_to_dict(self, state: GitHubListerState) -> Dict[str, Any]: + return asdict(state) + + def get_pages(self) -> Iterator[List[Dict[str, Any]]]: + current_id = 0 + if self.first_id is not None: + current_id = self.first_id + elif self.state is not None: + current_id = self.state.last_seen_id + + while self.last_id is None or current_id < self.last_id: + current_url = ( + f"https://api.github.com/repositories?since={current_id}&per_page=1000" + ) + logger.debug("Getting page %s", current_url) + response = self.session.get(current_url) + + # Handle status codes + if response.status_code == 429: + logger.info( + "Ran out of rate limit for current token (user %s), rotating", + self.tokens[self.current_token]["user"], + ) + self.update_token() + continue + elif response.status_code != 200: + logger.warning( + "Got unexpected status_code %s: %s", + response.status_code, + response.content, + ) + break + + yield response.json() + + if "next" not in response.links: + # All done + logger.debug( + "No next link found in the response headers, all caught up" + ) + break + + next_url = urlparse(response.links["next"]["url"]) + if not next_url.query: + logger.warning("Failed to parse url %s", current_url) + break + + parsed_query = parse_qs(next_url.query) + current_id = int(parsed_query["since"][0]) + + def get_origins_from_page( + self, page: List[Dict[str, Any]] + ) -> Iterator[ListedOrigin]: + """Convert a page of GitHub repositories into a list of ListedOrigins. + + This records the html_url, as well as the pushed_at value if it exists. """ - # Next listed repository ids are strictly greater than the 'since' - # parameter, so increment the index to avoid disabling the latest - # created task when processing a new repositories page returned by - # the Github API - return super().disable_deleted_repo_tasks(index + 1, next_index, keep_these) + assert self.lister_obj.id is not None + + for repo in page: + pushed_at_str = repo.get("pushed_at") + pushed_at: Optional[datetime.datetime] = None + if pushed_at_str: + pushed_at = iso8601.parse_date(pushed_at_str) + + yield ListedOrigin( + lister_id=self.lister_obj.id, + url=repo["html_url"], + visit_type="git", + last_update=pushed_at, + ) + + def commit_page(self, page: List[Dict[str, Any]]): + """Update the currently stored state using the latest listed page""" + if self.relisting: + # Don't update internal state when relisting + return + + last_id = page[-1]["id"] + + if last_id > self.state.last_seen_id: + self.state.last_seen_id = last_id + + def finalize_state(self): + if self.relisting: + return + + # Pull fresh lister state from the scheduler backend + scheduler_state = self.get_state_from_scheduler() + + # Update the lister state in the backend only if the last seen id of + # the current run is higher than that stored in the database. + if self.state.last_seen_id > scheduler_state.last_seen_id: + self.state_updated = True diff --git a/swh/lister/github/models.py b/swh/lister/github/models.py deleted file mode 100644 --- a/swh/lister/github/models.py +++ /dev/null @@ -1,17 +0,0 @@ -# Copyright (C) 2017-2019 the Software Heritage developers -# License: GNU General Public License version 3, or any later version -# See top-level LICENSE file for more information - -from sqlalchemy import Column, Boolean, Integer - -from swh.lister.core.models import IndexingModelBase - - -class GitHubModel(IndexingModelBase): - """a GitHub repository""" - - __tablename__ = "github_repo" - - uid = Column(Integer, primary_key=True) - indexable = Column(Integer, index=True) - fork = Column(Boolean, default=False) diff --git a/swh/lister/github/tasks.py b/swh/lister/github/tasks.py --- a/swh/lister/github/tasks.py +++ b/swh/lister/github/tasks.py @@ -3,42 +3,46 @@ # See top-level LICENSE file for more information import random +from typing import Dict, Optional from celery import group, shared_task from swh.lister.github.lister import GitHubLister -GROUP_SPLIT = 10000 +GROUP_SPLIT = 100000 @shared_task(name=__name__ + ".IncrementalGitHubLister") -def list_github_incremental(**lister_args): +def list_github_incremental() -> Dict[str, int]: "Incremental update of GitHub" - lister = GitHubLister(**lister_args) - return lister.run(min_bound=lister.db_last_index(), max_bound=None) + lister = GitHubLister() + return lister.run().dict() @shared_task(name=__name__ + ".RangeGitHubLister") -def _range_github_lister(start, end, **lister_args): - lister = GitHubLister(**lister_args) - return lister.run(min_bound=start, max_bound=end) +def _range_github_lister(first_id: int, last_id: int) -> Dict[str, int]: + lister = GitHubLister(first_id=first_id, last_id=last_id) + return lister.run().dict() @shared_task(name=__name__ + ".FullGitHubRelister", bind=True) -def list_github_full(self, split=None, **lister_args): +def list_github_full(self, split: Optional[int] = None) -> str: """Full update of GitHub It's not to be called for an initial listing. """ - lister = GitHubLister(**lister_args) - ranges = lister.db_partition_indices(split or GROUP_SPLIT) - if not ranges: - self.log.info("Nothing to list") - return + lister = GitHubLister() + last_index = lister.state.last_seen_id + + bounds = list(range(0, last_index + 1, split or GROUP_SPLIT)) + if bounds[-1] != last_index: + bounds.append(last_index) + + ranges = list(zip(bounds[:-1], bounds[1:])) random.shuffle(ranges) promise = group( - _range_github_lister.s(minv, maxv, **lister_args) for minv, maxv in ranges + _range_github_lister.s(first_id=minv, last_id=maxv) for minv, maxv in ranges )() self.log.debug("%s OK (spawned %s subtasks)" % (self.name, len(ranges))) try: @@ -50,5 +54,5 @@ @shared_task(name=__name__ + ".ping") -def _ping(): +def _ping() -> str: return "OK" diff --git a/swh/lister/github/tests/data/https_api.github.com/empty_response.json b/swh/lister/github/tests/data/https_api.github.com/empty_response.json deleted file mode 100644 --- a/swh/lister/github/tests/data/https_api.github.com/empty_response.json +++ /dev/null @@ -1 +0,0 @@ -[] diff --git a/swh/lister/github/tests/data/https_api.github.com/first_response.json b/swh/lister/github/tests/data/https_api.github.com/first_response.json deleted file mode 120000 --- a/swh/lister/github/tests/data/https_api.github.com/first_response.json +++ /dev/null @@ -1 +0,0 @@ -repositories,since=0 \ No newline at end of file diff --git a/swh/lister/github/tests/data/https_api.github.com/next_response.json b/swh/lister/github/tests/data/https_api.github.com/next_response.json deleted file mode 100644 --- a/swh/lister/github/tests/data/https_api.github.com/next_response.json +++ /dev/null @@ -1,6702 +0,0 @@ -[ - 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Lister = GitHubLister - test_re = re.compile(r"/repositories\?since=([^?&]+)") - lister_subdir = "github" - good_api_response_file = "data/https_api.github.com/first_response.json" - bad_api_response_file = "data/https_api.github.com/empty_response.json" - first_index = 0 - last_index = 369 - entries_per_page = 100 - convert_type = int - - def response_headers(self, request): - headers = {"X-RateLimit-Remaining": "1"} - if self.request_index(request) == self.first_index: - headers.update( - { - "Link": ";" - ' rel="next",' - ";" - ' rel="first"' % self.last_index - } - ) - else: - headers.update( - { - "Link": ";" - ' rel="first"' - } - ) - return headers - - def mock_rate_quota(self, n, request, context): - self.rate_limit += 1 - context.status_code = 403 - context.headers["X-RateLimit-Remaining"] = "0" - context.headers["Retry-After"] = "1" # 1 second - return '{"error":"dummy"}' - - @requests_mock.Mocker() - def test_scheduled_tasks(self, http_mocker): - self.scheduled_tasks_test( - "data/https_api.github.com/next_response.json", 876, http_mocker - ) - - -def test_lister_github(swh_listers, requests_mock_datadir): - """Simple github listing should create scheduled tasks - - """ - lister = swh_listers["github"] - - lister.run() - - r = lister.scheduler.search_tasks(task_type="load-git") - assert len(r) == 100 - - for row in r: - assert row["type"] == "load-git" - # arguments check - args = row["arguments"]["args"] - assert len(args) == 0 - - # kwargs - kwargs = row["arguments"]["kwargs"] - url = kwargs["url"] - assert url.startswith("https://github.com") - - assert row["policy"] == "recurring" - assert row["priority"] is None +BASE_URL = "https://api.github.com/repositories" +PAGE_SIZE = 1000 +NUM_PAGES = 10 +ORIGIN_COUNT = PAGE_SIZE * NUM_PAGES + + +def github_repo(i: int) -> Dict[str, Union[int, str]]: + """Basic repository information returned by the GitHub API""" + + repo: Dict[str, Union[int, str]] = { + "id": i, + "html_url": f"https://github.com/origin/{i}", + } + + # Set the pushed_at date on one of the origins + if i == 4321: + repo["pushed_at"] = "2018-11-08T13:16:24Z" + + return repo + + +def github_response_callback( + request: requests_mock.request._RequestObjectProxy, + context: requests_mock.response._Context, +) -> List[Dict[str, Union[str, int]]]: + """Return GitHub API responses for the """ + # Check request headers + assert request.headers["Accept"] == "application/vnd.github.v3+json" + assert "Software Heritage Lister" in request.headers["User-Agent"] + + # Check request parameters: per_page == 1000, since = last_repo_id + assert "per_page" in request.qs and request.qs["per_page"] == [str(PAGE_SIZE)] + assert "since" in request.qs + + since = int(request.qs["since"][0]) + + next_page = since + PAGE_SIZE + if next_page < ORIGIN_COUNT: + # the first id for the next page is within our origin count; add a Link + # header to the response + next_url = f"{BASE_URL}?per_page={PAGE_SIZE}&since={next_page}" + context.headers["Link"] = f"<{next_url}>; rel=next" + + return [github_repo(i) for i in range(since + 1, min(next_page, ORIGIN_COUNT) + 1)] + + +@pytest.fixture() +def requests_mocker() -> Iterator[requests_mock.Mocker]: + with requests_mock.Mocker() as mock: + mock.get(BASE_URL, json=github_response_callback) + yield mock + + +def get_lister_data(swh_scheduler: SchedulerInterface) -> Lister: + """Retrieve the data for the GitHub Lister""" + return swh_scheduler.get_or_create_lister(name="github", instance_name="github") + + +def set_lister_state(swh_scheduler: SchedulerInterface, state: Dict[str, Any]) -> None: + """Set the state of the lister in database""" + lister = swh_scheduler.get_or_create_lister(name="github", instance_name="github") + lister.current_state = state + swh_scheduler.update_lister(lister) + + +def check_origin_4321(swh_scheduler: SchedulerInterface, lister: Lister) -> None: + """Check that origin 4321 exiss and has the proper last_update timestamp""" + origin_4321_req = swh_scheduler.get_listed_origins( + url="https://github.com/origin/4321" + ) + assert len(origin_4321_req.origins) == 1 + origin_4321 = origin_4321_req.origins[0] + assert origin_4321.lister_id == lister.id + assert origin_4321.visit_type == "git" + assert origin_4321.last_update == datetime.datetime( + 2018, 11, 8, 13, 16, 24, tzinfo=datetime.timezone.utc + ) + + +def check_origin_5555(swh_scheduler: SchedulerInterface, lister: Lister) -> None: + """Check that origin 5555 exists and has no last_update timestamp""" + origin_5555_req = swh_scheduler.get_listed_origins( + url="https://github.com/origin/5555" + ) + assert len(origin_5555_req.origins) == 1 + origin_5555 = origin_5555_req.origins[0] + assert origin_5555.lister_id == lister.id + assert origin_5555.visit_type == "git" + assert origin_5555.last_update is None + + +def test_lister_from_empty_state( + mock_get_scheduler, swh_scheduler, caplog, requests_mocker: requests_mock.Mocker +) -> None: + caplog.set_level(logging.DEBUG, "swh.lister.github.lister") + + # Run the lister in incremental mode + lister = GitHubLister() + res = lister.run() + + assert res == ListerStats(pages=NUM_PAGES, origins=ORIGIN_COUNT) + + listed_origins = swh_scheduler.get_listed_origins(limit=ORIGIN_COUNT + 1) + assert len(listed_origins.origins) == ORIGIN_COUNT + assert listed_origins.next_page_token is None + + lister_data = get_lister_data(swh_scheduler) + assert lister_data.current_state == {"last_seen_id": ORIGIN_COUNT} + + check_origin_4321(swh_scheduler, lister_data) + check_origin_5555(swh_scheduler, lister_data) + + +def test_lister_incremental( + mock_get_scheduler, swh_scheduler, caplog, requests_mocker +) -> None: + caplog.set_level(logging.DEBUG, "swh.lister.github.lister") + + # Number of origins to skip + skip_origins = 2000 + expected_origins = ORIGIN_COUNT - skip_origins + + # Bump the last_seen_id in the scheduler backend + set_lister_state(swh_scheduler, {"last_seen_id": skip_origins}) + + # Run the lister in incremental mode + lister = GitHubLister() + res = lister.run() + + full_pages, partial_page_len = divmod(expected_origins, PAGE_SIZE) + expected_pages = full_pages + bool(partial_page_len) + + assert res == ListerStats(pages=expected_pages, origins=expected_origins) + + listed_origins = swh_scheduler.get_listed_origins(limit=expected_origins + 1) + assert len(listed_origins.origins) == expected_origins + assert listed_origins.next_page_token is None + + lister_data = get_lister_data(swh_scheduler) + assert lister_data.current_state == {"last_seen_id": ORIGIN_COUNT} + + check_origin_4321(swh_scheduler, lister_data) + check_origin_5555(swh_scheduler, lister_data) + + +def test_lister_relister( + mock_get_scheduler, swh_scheduler, caplog, requests_mocker +) -> None: + caplog.set_level(logging.DEBUG, "swh.lister.github.lister") + + # Bump the last_seen_id in the scheduler backend as a canary + set_lister_state(swh_scheduler, {"last_seen_id": 123}) + + lister = GitHubLister(first_id=10, last_id=1011) + res = lister.run() + + assert res == ListerStats(pages=2, origins=2000) + + # Check that the re-listing mode hasn't touched the stored state + lister_data = get_lister_data(swh_scheduler) + assert lister_data.current_state == {"last_seen_id": 123} diff --git a/swh/lister/github/tests/test_tasks.py b/swh/lister/github/tests/test_tasks.py --- a/swh/lister/github/tests/test_tasks.py +++ b/swh/lister/github/tests/test_tasks.py @@ -1,7 +1,10 @@ from time import sleep +from unittest.mock import call, patch + from celery.result import GroupResult -from unittest.mock import patch +from swh.lister.pattern import ListerStats +from swh.lister.github.lister import GitHubListerState def test_ping(swh_scheduler_celery_app, swh_scheduler_celery_worker): @@ -16,8 +19,8 @@ def test_incremental(lister, swh_scheduler_celery_app, swh_scheduler_celery_worker): # setup the mocked GitHubLister lister.return_value = lister - lister.db_last_index.return_value = 42 - lister.run.return_value = None + lister.state = GitHubListerState() + lister.run.return_value = ListerStats(pages=5, origins=5000) res = swh_scheduler_celery_app.send_task( "swh.lister.github.tasks.IncrementalGitHubLister" @@ -27,34 +30,37 @@ assert res.successful() lister.assert_called_once_with() - lister.db_last_index.assert_called_once_with() - lister.run.assert_called_once_with(min_bound=42, max_bound=None) @patch("swh.lister.github.tasks.GitHubLister") def test_range(lister, swh_scheduler_celery_app, swh_scheduler_celery_worker): # setup the mocked GitHubLister lister.return_value = lister - lister.run.return_value = None + lister.run.return_value = ListerStats(pages=5, origins=5000) res = swh_scheduler_celery_app.send_task( - "swh.lister.github.tasks.RangeGitHubLister", kwargs=dict(start=12, end=42) + "swh.lister.github.tasks.RangeGitHubLister", + kwargs=dict(first_id=12, last_id=42), ) assert res res.wait() assert res.successful() - lister.assert_called_once_with() - lister.db_last_index.assert_not_called() - lister.run.assert_called_once_with(min_bound=12, max_bound=42) + lister.assert_called_once_with(first_id=12, last_id=42) + lister.run.assert_called_once_with() @patch("swh.lister.github.tasks.GitHubLister") -def test_relister(lister, swh_scheduler_celery_app, swh_scheduler_celery_worker): +def test_lister_full(lister, swh_scheduler_celery_app, swh_scheduler_celery_worker): + last_index = 1000000 + expected_bounds = list(range(0, last_index + 1, 100000)) + if expected_bounds[-1] != last_index: + expected_bounds.append(last_index) + # setup the mocked GitHubLister + lister.state = GitHubListerState(last_seen_id=last_index) lister.return_value = lister - lister.run.return_value = None - lister.db_partition_indices.return_value = [(i, i + 9) for i in range(0, 50, 10)] + lister.run.return_value = ListerStats(pages=10, origins=10000) res = swh_scheduler_celery_app.send_task( "swh.lister.github.tasks.FullGitHubRelister" @@ -74,18 +80,13 @@ break sleep(1) - lister.assert_called_with() + # pulling the state out of the database + assert lister.call_args_list[0] == call() - # one by the FullGitHubRelister task - # + 5 for the RangeGitHubLister subtasks - assert lister.call_count == 6 - - lister.db_last_index.assert_not_called() - lister.db_partition_indices.assert_called_once_with(10000) - - # lister.run should have been called once per partition interval - for i in range(5): - # XXX inconsistent behavior: max_bound is INCLUDED here - assert ( - dict(min_bound=10 * i, max_bound=10 * i + 9), - ) in lister.run.call_args_list + # Calls for each of the ranges + range_calls = lister.call_args_list[1:] + # Check exhaustivity of the range calls + assert sorted(range_calls, key=lambda c: c[1]["first_id"]) == [ + call(first_id=f, last_id=l) + for f, l in zip(expected_bounds[:-1], expected_bounds[1:]) + ]